CX053782

Overview
NameCX053782
Unique NameCX053782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053782 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.023e-25
Identity = 73/207 (35.27%), Postives = 105/207 (50.72%), Query Frame = -1
Query:  224 QIKAMSLAYCLVDRDSPASGVLEFNSARGGDAVTAP---LIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEA-GDGGIIVDCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVAL-FDTCYDF-SGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFCFAFAPTSSAMSIIGNVQQQGTRVSFDLANNRVGFTPNKC 826
            Q+     +YC+    S     L   S        +P   LI++ ++ TFYY+ L G SVG   + I PS F ++   G GGII+D GT +T     AY S+R  F+    NL   +G +  FD C+   S   ++++PT  +HF  G  L+LP++NY I   S G  C A   +S  MSI GN+QQQ   V +D  N+ V F   +C
Sbjct:  231 QLDVTKFSYCMTPIGSSTPSNLLLGSLANSVTAGSPNTTLIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQI-NLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGGD-LELPSENYFIS-PSNGLICLAMGSSSQGMSIFGNIQQQNMLVVYDTGNSVVSFASAQC 434          
BLAST of CX053782 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.765e-24
Identity = 73/209 (34.93%), Postives = 111/209 (53.11%), Query Frame = -1
Query:  224 QIKAMSLAYCLVDRDSPASGVLEFNSARGGDAVTAP---LIRNKKVDTFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYNSLRDSF---VRLAGNLKPTSGVALFDTCYDF-SGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFCFAFAPTSS-AMSIIGNVQQQGTRVSFDLANNRVGFTPNKC 826
            Q+     +YC+    S +   L   SA  G    +P   LI +    T+YY+ L G +VGG  + IP S F++ + G GG+I+D GT +T L   AYN++  +F   + L    + +SG++   TC+   S   +V+VP +S+ F  G  L+L  +N LI   + G  C A   +S   +SI GN+QQQ T+V +DL N  V F P +C
Sbjct:  232 QLGVGQFSYCMTSYGSSSPSTLALGSAASGVPEGSPSTTLIHSSLNPTYYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLS---TCFQQPSDGSTVQVPEISMQFDGG-VLNLGEQNILIS-PAEGVICLAMGSSSQLGISIFGNIQQQETQVLYDLQNLAVSFVPTQC 435          
The following BLAST results are available for this feature:
BLAST of CX053782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP1_NEPGR7.023e-2535.27Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR7.765e-2434.93Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_8B09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-8B09-C17-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053782 ID=CX053782; Name=CX053782; organism=Citrus sinensis; type=EST; length=904bp
TTTTTTTTTTTTTTTTTAAAGCTTAATGCAATTTATTGAGGTGGATCCCA
CTTTCATCCACCACCAGTCAACAACGCTACTTTAACGCAACATCTTTCAG
TTCATTCTCCTAACAATTAAAAGGGGTATAAAAGTTTCTCCTAACAAATA
GACAGCTAACAGTCCCCTTTTTCTACCAATTACCAGGGGTAACAAGGTAA
TTATGGGTTCCGAAAAATGCCTAACACTTATTGGGAGTGAACCCGACGCG
ATTGTTCGCCAAATCAAAACTGACACGTGTTCCCTGTTGCTGCACGTTGC
CAATAATTGACATAGCCGACGACGTTGGAGCGAATGCGAAACAGAAAGTC
CCAGCCGAGTCTACTGGAATCAAGTAATTTTTGGCGGGTAAATCAAGAGC
TTTTCCAGCACCGAAGTGAAGCGACACCGTTGGGACCCTAACACTCCTTA
ATCCGGAGAAATCGTAGCACGTGTCGAATAAAGCGACCCCGCTGGTGGGT
TTCAAGTTACCCGCCAGCCTGACGAAAGAGTCGCGGAGCGAGTTGTAGGC
CTGAGTCTGCAGGCGAGTTATGGCGGTTCCACAATCAACAATAATCCCGC
CGTCGCCTGCTTCGTCCATTTCAAAAAGCGATGGTGGGATTTGGACCGCC
TGACCACCGACGCTGAATCCAGTGAGCCCCACGTAATAGAACGTGTCAAC
TTTTTTGTTCCTAATCAACGGAGCCGTGACCGCGTCACCGCCTCGTGCCG
AGTTGAACTCGAGAACACCAGAGGCGGGAGAGTCACGGTCCACCAAGCAG
TATGCCAATGACATCGCTTTAATTTGCTTAGTAAGAGAGAGCATGCCACC
CCCAAGTCCAAGCAAGCCGGCAGATCCAACAAAGAGCCCTTCATTATCAT
GACC
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