CX053712

Overview
NameCX053712
Unique NameCX053712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX053712 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.749e-13
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = -3 
Query:   94 FPRTVTNVGLPNSTYKAKILQNEKLSIKVVPEVLSFRSLNEKKSFNVIVTGMLTGQLLSAALVWSDGNHNARSPIIV 324
            F RT+T+V    STY+A I   + L+I V P VLSF  L ++KSF + V G + G ++SA+LVWSDG H  RSPI +
Sbjct:  651 FNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFVVSASLVWSDGVHYVRSPITI 727
[Close]
BLAST of CX053712 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.389e-11
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = -3 
Query:   88 FPRTVTNVGLPNSTYKAKILQNEKLSIKVVPEVLSFRSLNEKKSFNVIVTG--MLTGQLLSAALVWSDGNHNARSPIIVHA 324
            F R VTNVG P+S Y A +   + + I V P+ LSF   ++K+SF V+V    M  G+++S  LVW    H+ RSPI++++
Sbjct:  665 FRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPIVIYS 745
The following BLAST results are available for this feature:
BLAST of CX053712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CUCM1_CUCME2.749e-1349.35Cucumisin OS=Cucumis melo PE=1 SV=1[more]
XSP1_ARATH4.389e-1140.74Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_7G03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7G03-N6-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053712 ID=CX053712; Name=CX053712; organism=Citrus sinensis; type=EST; length=335bp
TTTTTTTTACAGCAAGCAATTGAAGTTCAATTTATTCCATTTCCAACTAC
ACATATCGCGTTATATATTTTAGCCTTGTGCCCCCTGTGCATGTACAATA
ATTGGGCTTCTGGCGTTATGATTGCCATCAGACCACACCAAGGCAGCAGA
GAGAAGTTGTCCCGTTAGCATTCCTGTAACAATGACATTAAAAGACTTCT
TCTCATTCAAGGACCTAAAAGAGAGAACTTCAGGTACAACTTTGATACTC
AATTTTTCATTTTGCAAGATTTTTGCCTTGTAAGTGGAGTTTGGAAGGCC
AACGTTTGTAACTGTCCTTGGAAATTTGATTGTGA
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