CX053710

Overview
NameCX053710
Unique NameCX053710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PDXH_MARAV (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=pdxH PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.314e-58
Identity = 114/193 (59.07%), Postives = 138/193 (71.50%), Query Frame = 2
Query:    8 LRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 586
            +R ++ S     E +  DP+ QF+ WF+DA  AG+ EPNAM+L+T G DG P  R VLLK  D  GFV+YTNY SRKA EL ENP A+LLF W GLNRQVR++G+VEKVS  ES +YF SRPRGSQIGA VS+QS VI  R +L Q+  E++ KFS    IP P FWGGYR+ PE  EFWQG+ SRLHDR +Y
Sbjct:    6 MRRDFESEGLDREHLNEDPVQQFQTWFEDARTAGILEPNAMSLATTGADGMPDLRTVLLKYFDSQGFVFYTNYGSRKAQELQENPRAALLFPWIGLNRQVRIQGAVEKVSKAESLRYFSSRPRGSQIGAWVSEQSQVITSRGLLEQKVAEMKRKFSSGE-IPLPSFWGGYRVVPERIEFWQGRPSRLHDRFEY 197          
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PDXH_CUPTR (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=pdxH PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.314e-58
Identity = 110/200 (55.00%), Postives = 141/200 (70.50%), Query Frame = 2
Query:    8 LRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEING 607
            LR  Y+     E  V  DP++QF++WFD+A+ A L EPNAM+L+TV  DG+PS+R+VLLKG+D  GF ++TNYESRK  +L  NP A+LLF+W  L RQVRVEG VEKVSD+ES+ YF +RP GS++GA  S QS  +PGR VL Q+ +E   KF +    P+P +WGGYRL P   EFWQG+ SRLHDR+ Y  Q   G
Sbjct:    7 LRRTYVLGALSESDVAPDPMSQFKRWFDEAVTAKLPEPNAMSLATVDADGQPSARIVLLKGIDDRGFTFFTNYESRKGLDLAANPRAALLFHWVQLERQVRVEGRVEKVSDDESDAYFATRPLGSRVGAWASAQSREVPGRDVLEQREQEYRSKFGENP--PRPPYWGGYRLVPTALEFWQGRPSRLHDRIAYRLQPGTG 204          
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PDXH_RALEJ (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ralstonia eutropha (strain JMP134) GN=pdxH PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.824e-58
Identity = 108/193 (55.96%), Postives = 137/193 (70.98%), Query Frame = 2
Query:    8 LRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 586
            LR  Y+     E  V  DPI QF++WFD+A+ A L EPNAM L+TVG DG+PS+R+VLLKG+D  GF ++TNYESRK  ++  NP A+LLF+W  L RQVRVEG VEKV+D+ES+ Y+ SRP GS++GA  S+QS  +PGR VL Q+  E   KF +    P+P  WGGYRL P   EFWQG+ SRLHDR+ Y
Sbjct:    7 LRRTYVLGSLNESDVAGDPIAQFKRWFDEAVTAKLPEPNAMTLATVGADGQPSARIVLLKGMDEKGFTFFTNYESRKGLDMAANPRAALLFHWVQLERQVRVEGRVEKVADDESDAYYASRPLGSRLGAWASEQSREVPGRDVLEQRESEYRAKFGENP--PRPAHWGGYRLVPTALEFWQGRPSRLHDRIAY 197          
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PDXH_ACAM1 (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Acaryochloris marina (strain MBIC 11017) GN=pdxH PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.519e-58
Identity = 112/201 (55.72%), Postives = 144/201 (71.64%), Query Frame = 2
Query:    2 SALRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRL--QYSPQE 598
            S LR +Y     LE +V ++PI QF+ WF+ A+ A L EPNAM L+TV  D +PS+RMVLLKG D+ GF++YTNY SRK  +L + P A+L+F+W  L RQVR+EG V KVSD E++ YF SRPRGSQ+GA  S QS VI  R +L Q+ + LE+K+ +   IP+P  WGGYR+ P L EFWQG+TSRLHDRL  +YS QE
Sbjct:   12 SDLRRDYRQQALLETEVNANPILQFQSWFEQAVQAELPEPNAMTLATVSADSQPSARMVLLKGFDQQGFIFYTNYLSRKGQDLAQRPWAALVFWWAELERQVRIEGKVVKVSDSETKAYFESRPRGSQLGAWASDQSQVIGDRDILDQRLQALEQKYQN-QPIPRPPHWGGYRVTPHLIEFWQGRTSRLHDRLCYRYSDQE 211          
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PDXH_RALEH (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=pdxH PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.453e-57
Identity = 108/196 (55.10%), Postives = 139/196 (70.92%), Query Frame = 2
Query:    8 LRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQ 595
            LR +Y+     E  V  DP++QF++WFD+A+ A L EPNAM L+TV  DG+PS+R+VLLKG+D  GF ++TNYESRK  +L  NP A+LLF+W  L RQVRVEG VEKVSD+ES+ YF +RP GS++GA  S QS  +PGR VL Q+ +E   KF +    P+P  WGGYRL P   EFWQG+ SRLHDR+ +  Q
Sbjct:    7 LRRSYVLGSLSETDVAPDPMSQFKRWFDEAVTAKLPEPNAMTLATVDADGQPSARIVLLKGIDDRGFTFFTNYESRKGLDLAANPRAALLFHWVQLERQVRVEGRVEKVSDDESDAYFATRPLGSRVGAWASAQSREVPGRDVLEQREQEYRSKFGENP--PRPPHWGGYRLVPTALEFWQGRPSRLHDRIAFRLQ 200          
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PDXH_BORPE (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bordetella pertussis GN=pdxH PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.522e-57
Identity = 108/202 (53.47%), Postives = 142/202 (70.30%), Query Frame = 2
Query:    2 SALRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEING 607
            S LR++Y     +EEQ  + P  QF +WFD+A+AA + EPNAM L+TV  +G+PS+R+VL+KG D  GFV++TNYESRK  +L  NP ASLLF+W  L RQVR+EG +EKVS  ES++YFHSRP GS++GA  S+QS  I  R  L  + +E  +++ +    P+P  WGGYRLKP  FEFWQG+ SRLHDRL+Y P    G
Sbjct:    4 SDLRQSYEKGVLVEEQAAASPFQQFARWFDEAVAARVPEPNAMTLATVNAEGQPSARIVLIKGYDDAGFVFFTNYESRKGLDLDANPRASLLFFWQPLERQVRIEGVIEKVSAAESDEYFHSRPLGSRLGAWASRQSQPIT-RDELEAREREFRDRYGEHP--PRPPHWGGYRLKPNRFEFWQGRPSRLHDRLRYEPDGKQG 202          
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PDXH_BORPA (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bordetella parapertussis GN=pdxH PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.522e-57
Identity = 108/202 (53.47%), Postives = 142/202 (70.30%), Query Frame = 2
Query:    2 SALRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEING 607
            S LR++Y     +EEQ  + P  QF +WFD+A+AA + EPNAM L+TV  +G+PS+R+VL+KG D  GFV++TNYESRK  +L  NP ASLLF+W  L RQVR+EG +EKVS  ES++YFHSRP GS++GA  S+QS  I  R  L  + +E  +++ +    P+P  WGGYRLKP  FEFWQG+ SRLHDRL+Y P    G
Sbjct:    4 SDLRQSYEKGVLVEEQAAASPFQQFARWFDEAVAARVPEPNAMTLATVNAEGQPSARIVLIKGYDDAGFVFFTNYESRKGLDLDANPRASLLFFWQPLERQVRIEGVIEKVSAAESDEYFHSRPLGSRLGAWASRQSQPIT-RDELEAREREFRDRYGEHP--PRPPHWGGYRLKPNRFEFWQGRPSRLHDRLRYEPDGKQG 202          
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PDXH_BORBR (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bordetella bronchiseptica GN=pdxH PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.522e-57
Identity = 108/202 (53.47%), Postives = 142/202 (70.30%), Query Frame = 2
Query:    2 SALRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEING 607
            S LR++Y     +EEQ  + P  QF +WFD+A+AA + EPNAM L+TV  +G+PS+R+VL+KG D  GFV++TNYESRK  +L  NP ASLLF+W  L RQVR+EG +EKVS  ES++YFHSRP GS++GA  S+QS  I  R  L  + +E  +++ +    P+P  WGGYRLKP  FEFWQG+ SRLHDRL+Y P    G
Sbjct:    4 SDLRQSYEKGVLVEEQAAASPFQQFARWFDEAVAARVPEPNAMTLATVNAEGQPSARIVLIKGYDDAGFVFFTNYESRKGLDLDANPRASLLFFWQPLERQVRIEGVIEKVSAAESDEYFHSRPLGSRLGAWASRQSQPIT-RDELEAREREFRDRYGEHP--PRPPHWGGYRLKPNRFEFWQGRPSRLHDRLRYEPDGKQG 202          
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PDXH_RALME (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=pdxH PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.419e-57
Identity = 107/193 (55.44%), Postives = 135/193 (69.95%), Query Frame = 2
Query:    8 LRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 586
            LR NY+     E  V  DPI QF+ WFD+A+ A L EPNAM L+TVG DG+PS+R+VLLKG+D DGF ++TNYESRK  +L  NP A+LLF+W  L RQ+RVEG VEKV D ES+ Y+ SRP GS++GA  S+QS  + GR V+  +  +   KF +    P+P  WGGYRLKP   EFWQG+ SRLHDR+ Y
Sbjct:    7 LRRNYMLSALSETDVAPDPIRQFQSWFDEAMQAKLPEPNAMTLATVGADGQPSARIVLLKGMDADGFTFFTNYESRKGVDLLANPRAALLFHWVQLERQIRVEGIVEKVEDAESDAYYASRPLGSRLGAWASEQSREVAGRDVIEAREADFRNKFGENP--PRPPHWGGYRLKPTWIEFWQGRPSRLHDRIAY 197          
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PDXH_HERAR (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Herminiimonas arsenicoxydans GN=pdxH PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.419e-57
Identity = 105/197 (53.30%), Postives = 142/197 (72.08%), Query Frame = 2
Query:    8 LRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQE 598
            +R +Y   +  E    +DP+ QF KWFD+A+ A + EPNAM +STVG++G+PSSR+VL+K  D+ GF W+TNY+SRK  EL +NP+A+LLF+W  L R+VR+EG VE+VS EESEQYF SRP  S++ AI S QS+ I  R  L  QY ++E +  D +  P+P  WGGYRL+PE  EFWQG+ SRLHDR+ Y+ Q+
Sbjct:    6 IRTDYAQADLSETDTAADPVTQFAKWFDEALHAEVPEPNAMGVSTVGENGRPSSRIVLIKDFDQRGFTWFTNYDSRKGRELEKNPYAALLFHWIALEREVRIEGRVERVSAEESEQYFQSRPVKSRLSAIASAQSAPIADRAALEAQYAKVEAQHGDST--PRPPHWGGYRLQPEYVEFWQGRRSRLHDRIAYTLQK 200          
The following BLAST results are available for this feature:
BLAST of CX053710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 357
Match NameE-valueIdentityDescription
PDXH_MARAV1.314e-5859.07Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ma... [more]
PDXH_CUPTR1.314e-5855.00Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Cu... [more]
PDXH_RALEJ3.824e-5855.96Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ra... [more]
PDXH_ACAM18.519e-5855.72Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ac... [more]
PDXH_RALEH1.453e-5755.10Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ra... [more]
PDXH_BORPE5.522e-5753.47Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bo... [more]
PDXH_BORPA5.522e-5753.47Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bo... [more]
PDXH_BORBR5.522e-5753.47Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bo... [more]
PDXH_RALME9.419e-5755.44Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ra... [more]
PDXH_HERAR9.419e-5753.30Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=He... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_7G02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7G02-N4-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053710 ID=CX053710; Name=CX053710; organism=Citrus sinensis; type=EST; length=673bp
ATCAGCTCTACGAGAGAATTATATTTCTCCAGAATTCCTTGAGGAGCAAG
TTGAATCTGACCCCATTAATCAGTTTCGGAAATGGTTTGATGATGCAATT
GCTGCAGGATTGAGGGAACCAAATGCAATGGCTTTATCAACTGTTGGCAA
GGATGGAAAACCCTCATCACGAATGGTATTGCTCAAGGGAGTTGATAGGG
ATGGTTTTGTCTGGTACACCAATTATGAAAGTAGAAAGGCATGTGAATTA
TGTGAAAATCCTCACGCATCTCTTCTTTTCTACTGGGATGGTCTAAATCG
GCAGGTAAGAGTGGAAGGCTCTGTTGAAAAAGTTTCTGATGAGGAATCTG
AGCAGTACTTCCATAGCCGTCCCAGAGGAAGTCAGATTGGAGCAATAGTT
AGCAAACAGAGTTCTGTGATTCCTGGAAGGCATGTTCTGTACCAGCAATA
CAAAGAATTAGAGGAAAAATTCTCTGATTGGAGTTTGATTCCAAAACCAG
AATTCTGGGGAGGATACAGGCTTAAACCAGAGCTTTTCGAATTCTGGCAA
GGACAGACGTCTCGTTTGCATGATAGGTTGCAATATTCTCCTCAGGAAAT
CAACGGANAACGGGATGGCAATTTTTTAGTTTTGCTTAAGAAAGTTTTGC
TGTGTTGGAAGTGCGAAGCTTCA
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