CX053709

Overview
NameCX053709
Unique NameCX053709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PNPO_MOUSE (Pyridoxine-5'-phosphate oxidase OS=Mus musculus GN=Pnpo PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.682e-44
Identity = 84/138 (60.87%), Postives = 110/138 (79.71%), Query Frame = -2
Query:  462 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 875
            M+LLKG  +DGF ++TNYESRK  EL  NP ASL+FYW+ LNRQVRVEG V+K+ ++E+E YFHSRP+ SQIGA+VS+QSSVIP R  L ++ +EL + + D   +PKPE+WGGY L P++ EFWQGQT+RLHDR+ +
Sbjct:   96 MLLLKGFGKDGFRFFTNYESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEKEAENYFHSRPKSSQIGAVVSRQSSVIPDREYLRKKNEELGQLYQDQE-VPKPEYWGGYILYPQVMEFWQGQTNRLHDRIVF 232          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PNPO_RAT (Pyridoxine-5'-phosphate oxidase OS=Rattus norvegicus GN=Pnpo PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.390e-44
Identity = 83/138 (60.14%), Postives = 110/138 (79.71%), Query Frame = -2
Query:  462 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 875
            M+LLKG  +DGF ++TNYESRK  EL  NP ASL+FYW+ LNRQVRVEG V+K+ ++E+E YFHSRP+ SQIGA+VS+QSSVIP R  L ++ +EL + + +   +PKPE+WGGY L P++ EFWQGQT+RLHDR+ +
Sbjct:   96 MLLLKGFGKDGFRFFTNYESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEKEAENYFHSRPKSSQIGAVVSRQSSVIPDREYLRKKNEELGQLYREQE-VPKPEYWGGYILYPQVMEFWQGQTNRLHDRIVF 232          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PNPO_BOVIN (Pyridoxine-5'-phosphate oxidase OS=Bos taurus GN=PNPO PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.390e-44
Identity = 84/138 (60.87%), Postives = 110/138 (79.71%), Query Frame = -2
Query:  462 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 875
            MVLLKG  +DGF ++TN+ESRK  EL  NP ASL+FYW+ L+RQVRVEG V+K+ +EE+E YFHSRP+ SQIGA+VS QSSVIP R  L ++ KELE+ + +   +PKP++WGGY L P++ EFWQGQT+RLHDR+ +
Sbjct:   96 MVLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLHRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNKELEQLYQEQE-VPKPKYWGGYILYPQVMEFWQGQTNRLHDRIVF 232          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PNPO_HUMAN (Pyridoxine-5'-phosphate oxidase OS=Homo sapiens GN=PNPO PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.423e-43
Identity = 84/138 (60.87%), Postives = 109/138 (78.99%), Query Frame = -2
Query:  462 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 875
            M+LLKG  +DGF ++TN+ESRK  EL  NP ASL+FYW+ LNRQVRVEG V+K+ +EE+E YFHSRP+ SQIGA+VS QSSVIP R  L ++ +ELE+ + D   +PKP+ WGGY L P++ EFWQGQT+RLHDR+ +
Sbjct:   96 MLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQE-VPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVF 232          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_MARAV (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=pdxH PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.574e-42
Identity = 89/137 (64.96%), Postives = 103/137 (75.18%), Query Frame = -2
Query:  462 VLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 872
            VLLK  D  GFV+YTNY SRKA EL ENP A+LLF W GLNRQVR++G+VEKVS  ES +YF SRPRGSQIGA VS+QS VI  R +L Q+  E++ KFS    IP P FWGGYR+ PE  EFWQG+ SRLHDR +Y
Sbjct:   62 VLLKYFDSQGFVFYTNYGSRKAQELQENPRAALLFPWIGLNRQVRIQGAVEKVSKAESLRYFSSRPRGSQIGAWVSEQSQVITSRGLLEQKVAEMKRKFSSGE-IPLPSFWGGYRVVPERIEFWQGRPSRLHDRFEY 197          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_ACAM1 (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Acaryochloris marina (strain MBIC 11017) GN=pdxH PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.063e-41
Identity = 84/144 (58.33%), Postives = 106/144 (73.61%), Query Frame = -2
Query:  450 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRL--QYSPQE 875
            MVLLKG D+ GF++YTNY SRK  +L + P A+L+F+W  L RQVR+EG V KVSD E++ YF SRPRGSQ+GA  S QS VI  R +L Q+ + LE+K+ +   IP+P  WGGYR+ P L EFWQG+TSRLHDRL  +YS QE
Sbjct:   69 MVLLKGFDQQGFIFYTNYLSRKGQDLAQRPWAALVFWWAELERQVRIEGKVVKVSDSETKAYFESRPRGSQLGAWASDQSQVIGDRDILDQRLQALEQKYQN-QPIPRPPHWGGYRVTPHLIEFWQGRTSRLHDRLCYRYSDQE 211          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_CUPTR (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=pdxH PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.924e-40
Identity = 82/145 (56.55%), Postives = 102/145 (70.34%), Query Frame = -2
Query:  441 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEING 875
            +VLLKG+D  GF ++TNYESRK  +L  NP A+LLF+W  L RQVRVEG VEKVSD+ES+ YF +RP GS++GA  S QS  +PGR VL Q+ +E   KF +    P+P +WGGYRL P   EFWQG+ SRLHDR+ Y  Q   G
Sbjct:   62 IVLLKGIDDRGFTFFTNYESRKGLDLAANPRAALLFHWVQLERQVRVEGRVEKVSDDESDAYFATRPLGSRVGAWASAQSREVPGRDVLEQREQEYRSKFGENP--PRPPYWGGYRLVPTALEFWQGRPSRLHDRIAYRLQPGTG 204          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH1_RALSO (Pyridoxine/pyridoxamine 5'-phosphate oxidase 1 OS=Ralstonia solanacearum GN=pdxH1 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.924e-40
Identity = 83/145 (57.24%), Postives = 102/145 (70.34%), Query Frame = -2
Query:  441 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEING 875
            +VLLK +D  GF ++TNY S K  EL  NPHA+LLF+W GL RQVRV+G VEKVS+ ES+ Y+HSRP GS++GA  S+QSS +P R VL  +  E  E+F D    P+P  WGGYRL PE  EFWQG+ SRLHDRL+Y  Q   G
Sbjct:   62 IVLLKNLDERGFTFFTNYCSHKGEELAANPHAALLFHWIGLERQVRVQGVVEKVSEAESDAYYHSRPLGSRLGAWASEQSSEVPDRAVLEAREAEYRERFGD--APPRPPHWGGYRLLPERIEFWQGRPSRLHDRLEYRRQPDGG 204          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_BURTA (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=pdxH PE=3 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 5.598e-40
Identity = 80/139 (57.55%), Postives = 103/139 (74.10%), Query Frame = -2
Query:  459 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYS 875
            +VL+KGVD  GFV++TNYESRK  EL  NP+A+LLFYW  L RQVR+EG +EK ++EES++YF SRP GS+IGA  S+QS+VI  R +L  + KE+  +F +    P+P  WGGYRL P   EFWQG+ SRLHDRL Y+
Sbjct:   62 IVLIKGVDERGFVFFTNYESRKGRELAHNPNAALLFYWIELERQVRIEGRIEKTTEEESDRYFASRPLGSRIGAWASEQSAVIESRALLEAREKEISARFGENP--PRPPHWGGYRLVPSTIEFWQGRPSRLHDRLLYT 198          
BLAST of CX053709 vs. ExPASy Swiss-Prot
Match: PDXH_JANMA (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Janthinobacterium sp. (strain Marseille) GN=pdxH PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.247e-39
Identity = 76/139 (54.68%), Postives = 100/139 (71.94%), Query Frame = -2
Query:  459 MVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYS 875
            ++L+K  D+ GF W+TNYESRK  EL +NPHA+LLF+W  L R+VR+EG VE+VS  ESEQYF SRP  S++ A+ S QS  +  R  L  QY ++E ++ +    P+PE WGGYRLKP+  EFWQG+ SRLHDR+ YS
Sbjct:   61 ILLIKDFDQRGFTWFTNYESRKGQELAQNPHAALLFHWIPLEREVRIEGRVERVSSAESEQYFQSRPVKSRLSALASSQSHPVADRTALEAQYAKVEAQYGEHP--PRPEHWGGYRLKPDYIEFWQGRASRLHDRIVYS 197          
The following BLAST results are available for this feature:
BLAST of CX053709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
PNPO_MOUSE1.682e-4460.87Pyridoxine-5'-phosphate oxidase OS=Mus musculus GN... [more]
PNPO_RAT6.390e-4460.14Pyridoxine-5'-phosphate oxidase OS=Rattus norvegic... [more]
PNPO_BOVIN6.390e-4460.87Pyridoxine-5'-phosphate oxidase OS=Bos taurus GN=P... [more]
PNPO_HUMAN1.423e-4360.87Pyridoxine-5'-phosphate oxidase OS=Homo sapiens GN... [more]
PDXH_MARAV1.574e-4264.96Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ma... [more]
PDXH_ACAM15.063e-4158.33Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ac... [more]
PDXH_CUPTR1.924e-4056.55Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Cu... [more]
PDXH1_RALSO1.924e-4057.24Pyridoxine/pyridoxamine 5'-phosphate oxidase 1 OS=... [more]
PDXH_BURTA5.598e-4057.55Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bu... [more]
PDXH_JANMA1.247e-3954.68Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_7G02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7G02-N4-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053709 ID=CX053709; Name=CX053709; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTACACAAACTGATTTNTGGCGATGCCAAAAATCCTTAATAATGA
AAACGGCATTCATTTGTAGTTATCAAATGTAGACACTCACTTCAGTCTAA
ATCATGAAATTGGGATGTAACAAGGAAAGTTGAGATCCACTAATAAAGTG
ACTTGCCATCATACCATCAAGCCAAAGAACCCATTGTGGCAACTGCTCTA
AAGCCCACACAAAAAGGGTGCGTGGGTTGAATGGATAGGCAGCCAATACA
ATTTCTGGTCAAAACCTTTATCAGCAGCAATCTTGAAAGTCTGTAATCTT
GTATGTAGGGTCTTTACTGTCAAAACTCATATCATCATCAGAACTCTCTT
TATTGGTTGGGGGGTTTTATTGATTGAAGCTTCGCACTTCCAACACAGCA
AAACTTTCTTAAGCAAAACTAAAAAATTGCCATCCCGTTTTCCGTTGATT
TCCTGAGGAGAATATTGCAACCTATCATGCAAACGAGACGTCTGTCCTTG
CCAGAATTCGAAAAGCTCTGGTTTAAGCCTGTATCCTCCCCAGAATTCTG
GTTTTGGAATCAAACTCCAATCAGAGAATTTTTCCTCTAATTCTTTGTAT
TGCTGGTACAGAACATGCCTTCCAGGAATCACAGAACTCTGTTTGCTAAC
TATTGCTCCAATCTGACTTCCTCTGGGACGGCTATGGAAGTACTGCTCAG
ATTCCTCATCAGAAACTTTTTCAACAGAGCCTTCCACTCTTACCTGCCGA
TTTAGACCATCCCAGTAGAAAAGAAGAGATGCGTGAGGATTTTCACATAA
TTCACATGCCTTTCTACTTTCATAATTGGTGTACCAGACAAAACCATCCC
TATCAACTCCCTTGAGCAATACCATT
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