CX053706

Overview
NameCX053706
Unique NameCX053706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053706 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.000e-19
Identity = 53/115 (46.09%), Postives = 68/115 (59.13%), Query Frame = -3
Query:   79 GDNSTCPEGSKQASPKDLNYPSMAAQVSAGKPFTIKFPRTVTNVGLPNSTYKAKILQNEKLSIKVVPEVLSFRSLNEKKSFNVIVTGMLTGQLLSAALVWSDGNHNARSPIIVHS 423
            GD S C  G+      DLNYPS    VS  + F   F RT+T+V    STY+A I   + L+I V P VLSF  L ++KSF + V G + G ++SA+LVWSDG H  RSPI + S
Sbjct:  616 GDYSACTSGNT-GRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFVVSASLVWSDGVHYVRSPITITS 729          
BLAST of CX053706 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.616e-14
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = -3
Query:   79 LNYPSMAAQVSAGKPFTIK-FPRTVTNVGLPNSTYKAKILQNEKLSIKVVPEVLSFRSLNEKKSFNVIVTG--MLTGQLLSAALVWSDGNHNARSPIIVHS 372
            LNYP++   + + K  T+  F R VTNVG P+S Y A +   + + I V P+ LSF   ++K+SF V+V    M  G+++S  LVW    H+ RSPI+++S
Sbjct:  645 LNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPIVIYS 745          
BLAST of CX053706 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.834e-11
Identity = 45/115 (39.13%), Postives = 60/115 (52.17%), Query Frame = -3
Query:   85 NSTCPEGSKQASPKDLNYPSMAAQVSAGKPFTIKFPRTVTNVGLPNSTYKAKIL-QNEKLSIKVVPEVLSFRSLNEKKSFNVIVT---GMLTGQLLSAALVWSDGNHNARSPIIV 417
            N TC + SK  S  DLNYPS A  V     +  K+ RTVT+VG    TY  K+  +   + I V P VL+F+  NEKKS+ V  T      +G     ++ WSDG H   SP+ +
Sbjct:  644 NYTC-DPSKSYSVADLNYPSFAVNVDGVGAY--KYTRTVTSVG-GAGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAI 754          
The following BLAST results are available for this feature:
BLAST of CX053706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CUCM1_CUCME2.000e-1946.09Cucumisin OS=Cucumis melo PE=1 SV=1[more]
XSP1_ARATH9.616e-1439.60Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
SUBL_ARATH5.834e-1139.13Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_7F11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7F11-L22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053706 ID=CX053706; Name=CX053706; organism=Citrus sinensis; type=EST; length=425bp
CAGCAAGCAATTGAAGTTCAATTTATTCCATTTCCAATTATACATATCGC
GTTATATATTTTAGCCCTGTGCCCCCTGTGAATGTACAATAATTGGGCTT
CTAGCGTTATGATTGCCATCAGACCACACCAAGGCAGCAGAGAGAAGTTG
TCCCGTTAGCATTCCTGTAACAATGACATTAAAAGACTTCTTCTCATTCA
AGGACCTAAAAGAGAGAACTTCAGGTACAACTTTGATACTCAATTTTTCA
TTTTGCAAGATTTTTGCCTTGTAAGTGGAGTTTGGAAGGCCAACGTTTGT
AACTGTCCTTGGAAATTTGATTGTGAAAGGCTTCCCAGCTGAAACTTGAG
CTGCCATTGAAGGGTAATTGAGATCTTTTGGGGATGCTTGCTTTGAGCCT
TCAGGACAAGTGCTGTTATCTCCCT
back to top