CX053679

Overview
NameCX053679
Unique NameCX053679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053679 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.849e-16
Identity = 59/174 (33.91%), Postives = 88/174 (50.57%), Query Frame = -3
Query:  313 SSAISEIQCSPCVSDS--------VKVNPTQEKSKHNSGNDTVLPNFPQLQGIASESTISIPDVNFVLSGNGNAENLDPTALDGTMSIDADAFSPDHDVDVSPDGIHKLPRIDDAFWEEFLTASPLPGDTDEINSSPLESGMTSELEQQPEQANGWDNFQHMDHLTEQMGLLTS 810
            S++  +IQC P V D+        +   P+  K+      D  +  FP LQ I +E  + IP   F + G     +L P   D ++ I+ D    + D         KLP I D+FWE+FL ASPL  D DE++S  L+       +++ +Q NGW   ++M +LTEQMGLL+S
Sbjct:  345 STSTPQIQC-PVVLDNGIPKEVPNMSAVPSVPKAVAPGPTDINILEFPDLQDIVAEENVDIPGGGFEMPGPEGVFSL-PEEGDDSVPIETDEILYNDDTQ-------KLPAIIDSFWEQFLVASPLSVDNDEVDSGVLD-------QKETQQGNGWTKAENMANLTEQMGLLSS 502          
BLAST of CX053679 vs. ExPASy Swiss-Prot
Match: HFA1E_ARATH (Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.014e-14
Identity = 51/134 (38.06%), Postives = 72/134 (53.73%), Query Frame = -3
Query:  301 PQLQGIASESTISIPDVNFVLSGNGNAENLDP--TALDGTMSIDADAFSPDHDVDVSPDGIHKLPRIDDAFWEEFLTASPLPGDTDEINSSPLESGMTSE-LEQQPEQANGWDNFQHMDHLTEQMGLLTSESRR 693
            P  QG A+  + S    + V     N E LDP    LDG + ++AD  +              LP + D+FWE+F+  SP+ G+TDE+ S  +E+ +  E LE Q   +N W   Q M+HLTEQMGLLTS++ R
Sbjct:  349 PPTQGAAASGSSSS---DLVGCETDNGECLDPIMAVLDGALELEADTLN------------ELLPEVQDSFWEQFIGESPVIGETDELISGSVENELILEQLELQSTLSNVWSKNQQMNHLTEQMGLLTSDALR 467          
BLAST of CX053679 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.499e-13
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = -3
Query:  325 SGNDTVLPNFPQLQGIASESTISIPDVNFVLSGNGNAENLDPTALDGTMSIDADAFSPDHDVDVSP---DGIHKLPRIDDAFWEEFLTASPLPGDTDEINSSPLESGMTSELEQQPEQANGWDNFQHMDHLTEQMG 723
            S +D ++P   QLQGI  E+   +          G    +D  A++G M +D  + SP  D+D      D I + P + D FWE+FL +   P        + ++  +++  E +P Q NGWD  Q+M+HLTEQMG
Sbjct:  398 SASDMIMPELSQLQGILPENNTDVI---------GCDSFMDTIAVEGKMGLDIGSLSPGADIDWQSGLLDEIQEFPSVGDPFWEKFLQSPSSP-------DAAMDDDISNTSETKP-QINGWDKTQNMEHLTEQMG 516          
BLAST of CX053679 vs. ExPASy Swiss-Prot
Match: HFA1B_ARATH (Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.608e-12
Identity = 64/182 (35.16%), Postives = 91/182 (50.00%), Query Frame = -3
Query:  301 PSSAISEI---QCSPCVSDSVKVNPTQEKSKHNSGNDTVLPNFPQ--LQGIASESTISIPDVNFVLSGNGNAENLDP--TALDGTMSIDADAFSPDHDVDVSP--DGIHKLPRIDDAFWEEFLTAS-PLPGDTDEINSSPLESGMTSELEQQPEQANGWD-NFQHMDHLTEQMGLLTSESRR 813
            PSS +S +   + SP    S      +    H+     V PN  Q   QG A   + S P+ + V     + E  DP    LD +   + DA SP+ +  ++   +G+ KLP I D FWE+F +   P   DTD+I S  +E+     LEQ+P   N W  N Q M +LTEQMGLL+SE++R
Sbjct:  307 PSSRVSGVTLAEFSPNTVQSATNQVPEASLAHHPQAGLVQPNIGQSPAQGAAPADSWS-PEFDLVGCETDSGECFDPIMAVLDES---EGDAISPEGEGKMNELLEGVPKLPGIQDPFWEQFFSVELPAIADTDDILSGSVENN-DLVLEQEP---NEWTRNEQQMKYLTEQMGLLSSEAQR 480          
BLAST of CX053679 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.791e-11
Identity = 44/138 (31.88%), Postives = 69/138 (50.00%), Query Frame = -3
Query:  325 SGNDTVLPNFPQLQGIASESTISIPDVNFVLSGNGNAENLDPTALDGTMSID--ADAFSPDHDVDVSP---DGIHKLPRIDDAFWEEFLTASPLPGDTDEINSSPLESGMTSELEQQPEQANGWDNFQHMDHLTEQMG 723
            S +D ++P   QLQGI  E+   +          G    +D +A++G + +D      SP  D+D      D I + P + D FWE+FL +   P        + ++  +++  E +P Q NGWD  Q+M+HLTEQMG
Sbjct:  396 SASDMIMPELSQLQGILPENNTDVI---------GCDSFMDTSAVEGKVGLDIIGSCLSPGADIDWQSGLLDEIEEFPSVGDPFWEKFLQSPCSP-------DAAMDDDISNTSETKP-QINGWDKTQNMEHLTEQMG 516          
The following BLAST results are available for this feature:
BLAST of CX053679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HSFA1_ORYSJ1.849e-1633.91Heat stress transcription factor A-1 OS=Oryza sati... [more]
HFA1E_ARATH1.014e-1438.06Heat stress transcription factor A-1e OS=Arabidops... [more]
HSF8_SOLPE2.499e-1333.09Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HFA1B_ARATH3.608e-1235.16Heat stress transcription factor A-1b OS=Arabidops... [more]
HSF8_SOLLC1.791e-1131.88Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_7E04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7E04-J8-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053679 ID=CX053679; Name=CX053679; organism=Citrus sinensis; type=EST; length=851bp
GATACTCTTACCGTCATTCAGAGAGTTTCTTCAGACCATTCACAATGAAA
TTCTTAAAACATTTAGTGATGACAAAAAGGTTCCTAAACTTCAAGGTCAT
GCCCTTGGACAAAAGCTTTTCTGCTCAGCAGCACTGAACAATGGAATTCT
TAAGACATTTGGTAATGGCAAAAAGGTTCCATAAACTTCAAGGGCATATC
TTTGGACAAAAGCTTTATCTGCTCAGCAGCACAGAACATCAACCTCTGCA
AGACTCAAGACAGGCTGAAACACATATATACATGAGGTAAGACCTCAAAG
CCTCCTGCTCTCAGATGTAAGAAGGCCCATCTGCTCTGTAAGATGATCCA
TATGCTGAAAATTATCCCATCCATTTGCCTGCTCTGGCTGCTGTTCAAGC
TCACTGGTCATACCACTTTCCAATGGGCTTGAATTAATCTCATCTGTGTC
ACCTGGGAGAGGGCTAGCCGTAAGAAACTCTTCCCAAAATGCATCATCAA
TTCGTGGAAGCTTATGGATACCATCTGGCGAAACATCCACATCATGATCA
GGAGAAAAGGCATCAGCGTCTATGGACATTGTTCCATCCAAAGCTGTTGG
ATCCAAATTTTCTGCATTTCCGTTTCCAGACAACACAAAATTCACATCAG
GGATGCTAATAGTGCTTTCTGATGCAATTCCTTGCAGTTGAGGGAAGTTG
GGCAAAACTGTGTCATTCCCAGAATTATGCTTACTTTTCTCTTGTGTTGG
ATTTACTTTCACAGAGTCACTCACACAAGGGGAACATTGAATCTCTGAGA
TGGCACTAGATGGGACATGAAACCTTGACTCTGTGGACATATTAGACTGC
C
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