CX053653

Overview
NameCX053653
Unique NameCX053653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053653 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 319.316 bits (817), Expect = 1.590e-86
Identity = 168/204 (82.35%), Postives = 180/204 (88.24%), Query Frame = 3
Query:  204 FAVRASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYIS 815
            F V+A+AKDIAFDQ SR+AMQAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL DPMENAGAALIREVASKTNDSAGDGTTTAS+LAREIIKLGLL+VTSGANPVS+K+GIDKTV  LVEELEK ARP++G DDIKAVATISAGND+LIG MIA+AIDKVGPDGVL                GMEIDRGYIS
Sbjct:   43 FVVKAAAKDIAFDQHSRSAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASILAREIIKLGLLNVTSGANPVSIKKGIDKTVAALVEELEKLARPVKGGDDIKAVATISAGNDELIGKMIAEAIDKVGPDGVLSIESSNSFETTVEVEEGMEIDRGYIS 246          
BLAST of CX053653 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 318.931 bits (816), Expect = 2.076e-86
Identity = 168/204 (82.35%), Postives = 179/204 (87.75%), Query Frame = 3
Query:  204 FAVRASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYIS 815
            F+VRA+ K+I+FDQ SRAA+QAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL D MENAGAALIREVASKTNDSAGDGTTTASVLAREIIK GLLSVTSGANPVSLKRGIDKTV  L+EELEKRARP++G  DIKAVATISAGND+L+GTMIADAIDKVGPDGVL                GMEIDRGYIS
Sbjct:    2 FSVRANVKEISFDQSSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRARPVKGGSDIKAVATISAGNDELVGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYIS 205          
BLAST of CX053653 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 318.546 bits (815), Expect = 2.712e-86
Identity = 166/204 (81.37%), Postives = 181/204 (88.73%), Query Frame = 3
Query:  204 FAVRASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYIS 815
            F+VRA+ K+IAFDQ SRAA+QAGIDKL+D VGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL + MENAGAALIREVASKTNDSAGDGTTTAS+LAREIIK GLLSVTSGANPVSLKRGIDKTV GL+EEL+K+ARP++GRDDI+AVA+ISAGNDDLIG+MIADAIDKVGPDGVL                GMEIDRGYIS
Sbjct:   42 FSVRANVKEIAFDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKARPVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYIS 245          
BLAST of CX053653 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 1.139e-84
Identity = 166/204 (81.37%), Postives = 177/204 (86.76%), Query Frame = 3
Query:  204 FAVRASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYIS 815
            F++RA+ K+IAFDQ SRAA+QAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL D MENAGAALIREVASKTNDSAGDGTTTASVLAREIIK GLLSVTSGANPVSLKRGIDKTV  L+EELEKR+RP++G  DIKAVATISAGND+LIG MIADAIDKVGPDGV                 GMEIDRGYIS
Sbjct:   41 FSLRANVKEIAFDQSSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRSRPVKGGRDIKAVATISAGNDELIGAMIADAIDKVGPDGVSPIESSSSFETTVEVEEGMEIDRGYIS 244          
BLAST of CX053653 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.393e-82
Identity = 158/200 (79.00%), Postives = 177/200 (88.50%), Query Frame = 3
Query:  216 ASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYIS 815
            A AK+IAFDQ SRAA+QAG++KL++AVG+TLGPRGRNVVLDE+G+PKVVNDGVTIARAIELA+PMENAGAALIREVASKTNDSAGDGTTTA VLAREIIKLG+LSVTSGANPVSLK+GIDKTV GL+EELE++ARP++G  DIKAVA+ISAGND+LIG MIADAIDKVGPDGVL                GMEIDRGYIS
Sbjct:    2 ADAKEIAFDQKSRAALQAGVEKLANAVGVTLGPRGRNVVLDEYGNPKVVNDGVTIARAIELANPMENAGAALIREVASKTNDSAGDGTTTACVLAREIIKLGILSVTSGANPVSLKKGIDKTVQGLIEELERKARPVKGSGDIKAVASISAGNDELIGAMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEIDRGYIS 201          
BLAST of CX053653 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 4.052e-82
Identity = 158/188 (84.04%), Postives = 169/188 (89.89%), Query Frame = 3
Query:  252 RAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYIS 815
            R A+Q+GIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVN+GVTIARAIEL DPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVS+KRGIDKTV GL+EELEK+ARP++GRDDIKAVA+ISAGND+LIGTMIADAIDKVGPDGVL                GMEIDRGYIS
Sbjct:    1 RTALQSGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNEGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKRGIDKTVQGLIEELEKKARPVKGRDDIKAVASISAGNDELIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYIS 188          
BLAST of CX053653 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 8.203e-67
Identity = 131/201 (65.17%), Postives = 162/201 (80.60%), Query Frame = 3
Query:  216 ASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYIS 815
            A AK+I FDQ SR  +QAGI+K++DAVG+TLGPRGRNVVL++ FG P+V+NDGV+I RAIEL DP+ENAGA LI+EVA +TND+AGDGTTTASVLARE+I  GL SVT+GANP+++KRG+DKT   LV +L++ A+P++GRDDIK VA+ISAGND+ IG MIADA+DKVG +GVL                GMEIDRGYIS
Sbjct:   34 ADAKEIVFDQESRRRLQAGINKVADAVGVTLGPRGRNVVLEQKFGVPQVINDGVSIRRAIELKDPVENAGAQLIKEVAGRTNDAAGDGTTTASVLAREMIHYGLQSVTAGANPIAVKRGLDKTAEYLVAKLKEHAKPVKGRDDIKNVASISAGNDNAIGEMIADALDKVGSNGVLSIETSNSTETVVEVQEGMEIDRGYIS 234          
BLAST of CX053653 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.074e-58
Identity = 115/199 (57.79%), Postives = 154/199 (77.39%), Query Frame = 3
Query:  222 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYIS 815
            AK + FD+ SR A++ G++ L+DAV +TLGP+GRNVVL++ FG+P+++NDGVTIA+ +EL DP+ENAGA L+REVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANPV+L++GIDKT+  LV+E+E +++P+ G D I  VATISAGND  +G MIA A+DKVG DGV+                GM+IDRGYIS
Sbjct:    2 AKHVVFDEESRRALERGVNSLADAVRITLGPKGRNVVLEKKFGAPQIINDGVTIAKEVELEDPLENAGAQLMREVASKTNDVAGDGTTTATVLAQALIREGLKNVAAGANPVALRKGIDKTIDALVKEIEAKSKPVAG-DAIAQVATISAGNDTEVGQMIAQAMDKVGKDGVITVEESKSLATEMEIVEGMQIDRGYIS 199          
BLAST of CX053653 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.892e-57
Identity = 113/199 (56.78%), Postives = 151/199 (75.88%), Query Frame = 3
Query:  222 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYIS 815
            AK I FD+ +R A++ G++ L+DAV +TLGP+GRNVVL++ FG+P++VNDGVTIA+ IEL DP+EN GA LIREVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANP+SLKRG++KTV  LV+E+   A+P+E    I  VATIS+GND+ IG MIA+A+DKVG +GV+                GM+ D+GY+S
Sbjct:    2 AKMIVFDETARRALERGVNALADAVRVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDPLENTGAQLIREVASKTNDVAGDGTTTATVLAQALIREGLRNVAAGANPMSLKRGMEKTVAKLVQEIAAMAKPVEDNKTIAEVATISSGNDEEIGQMIAEAMDKVGKEGVITVEESKSLVTELDVVEGMQFDKGYVS 200          
BLAST of CX053653 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.714e-56
Identity = 111/199 (55.78%), Postives = 151/199 (75.88%), Query Frame = 3
Query:  222 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYIS 815
            AK I F + +R A++ GI++L+DA+ +T+GP+GRNVVL++ FG+P++VNDGVTIA+ IELADP+EN GA L+REVASKTND AGDGTTTA++LA+ +++ GL ++++GANPV+L+RGI+KT   LVE++   A+P+EGR  I  VATISAGND  +G MIA A+D VG DGV+                GM+ DRGYIS
Sbjct:    2 AKRILFREEARKALEQGINQLADAIKVTIGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELADPLENTGAQLMREVASKTNDVAGDGTTTATILAQSMVREGLKNISAGANPVALRRGIEKTTAYLVEQIAAHAKPVEGRKTIAEVATISAGNDSEVGEMIAKAMDAVGRDGVITVEESKSLETELDVVEGMQFDRGYIS 200          
The following BLAST results are available for this feature:
BLAST of CX053653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBA_PEA1.590e-8682.35RuBisCO large subunit-binding protein subunit alph... [more]
RUB1_BRANA2.076e-8682.35RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_ARATH2.712e-8681.37RuBisCO large subunit-binding protein subunit alph... [more]
RUB2_BRANA1.139e-8481.37RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_WHEAT1.393e-8279.00RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_RICCO4.052e-8284.04RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_CHLRE8.203e-6765.17RuBisCO large subunit-binding protein subunit alph... [more]
CH601_ACAM11.074e-5857.7960 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH602_GLOVI5.892e-5756.7860 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH602_SYNJB1.714e-5655.7860 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_7D01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7D01-H2-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053653 ID=CX053653; Name=CX053653; organism=Citrus sinensis; type=EST; length=816bp
AAGTCCTCTCGCAGCTTCTACTTGTTGTTGGTACCTTATCCGAAACAATT
TCCCTCAGCAGACGCTTTACTCCGTTTGGTTGATTGTTCGAAATGGCTTC
TGCTAACGCCCTTTCTTCGGCTTCCATTCTTTGCTCTCCCAAACAGGGGA
GCTTGAGGAGGAGAGGAAATCAGAATCAGGGTCAGAGAGTAAATTACAGG
AGATTCGCTGTTAGAGCGTCTGCCAAAGATATTGCTTTTGACCAGATCTC
CAGGGCCGCAATGCAGGCCGGCATCGATAAGCTTTCCGATGCTGTTGGCC
TTACTCTGGGTCCAAGAGGGAGAAATGTTGTTCTGGATGAATTTGGAAGT
CCGAAAGTGGTTAATGATGGAGTAACAATAGCCCGAGCTATTGAGCTCGC
AGATCCCATGGAAAATGCTGGTGCTGCTCTTATTAGGGAGGTTGCAAGCA
AAACCAATGACTCTGCTGGTGATGGAACAACAACTGCATCAGTTCTTGCA
CGAGAAATAATTAAACTAGGACTCCTGAGTGTCACGTCTGGTGCAAATCC
TGTCTCCTTGAAGAGAGGGATTGATAAAACTGTACATGGGTTGGTAGAAG
AGTTGGAGAAGAGGGCCAGGCCTATCGAAGGTCGTGATGATATCAAAGCT
GTTGCTACCATCTCTGCTGGGAATGATGACCTGATTGGGACAATGATCGC
CGATGCAATTGACAAGGTTGGTCCTGATGGCGTCTTGTCAATCGAGTCAT
CATCATCATTTGAGACTACTGTTGAAGTTGAGGAAGGAATGGAGATTGAC
AGGGGTTACATCTCTC
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