CX053639

Overview
NameCX053639
Unique NameCX053639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053639 vs. ExPASy Swiss-Prot
Match: RSC5_DICDI (Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.179e-15
Identity = 52/149 (34.90%), Postives = 78/149 (52.35%), Query Frame = -1
Query:  440 DKKGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKICSRM--PPGQEKFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLK-----STLLEEIDESQIPEIYGGQL 865
            DKKGRPI   +        +    +FK  +VY L++  SRM  P G E+F  I D K +G  N D++  L A+  L D+ PER+G+   +  P +F   WKI+ PF++  T  K+ F+  KK+      + LLE +D   + +  GG L
Sbjct:  130 DKKGRPIIFAVPRNDTLKNVPSELKFKN-LVYWLEQGFSRMDEPKGIEQFCFIVDYKDFGSGNMDMKTNLEAMHFLLDHCPERMGQSLFLDPPALFWFAWKIISPFLNEVTLSKVRFINSKKVDGKRTFAELLEYVDIENLEQNLGGNL 277          
BLAST of CX053639 vs. ExPASy Swiss-Prot
Match: YKJ1_YEAST (CRAL-TRIO domain-containing protein YKL091C OS=Saccharomyces cerevisiae GN=YKL091C PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.568e-12
Identity = 43/120 (35.83%), Postives = 69/120 (57.50%), Query Frame = -1
Query:  446 LEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNS-DLRAYLGALS-ILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYGG 799
            ++E++ F  Y +     R     E    + DLKG   SN+  + +Y+  ++ I Q+YYPER+GK +I+H+P+ F T++K+V PF+D  T  KI F+     K  LL++I    +P  YGG
Sbjct:  150 VKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKI-FILGSSYKKELLKQIPIENLPVKYGG 268          
BLAST of CX053639 vs. ExPASy Swiss-Prot
Match: PATL5_ARATH (Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 51/161 (31.68%), Postives = 77/161 (47.83%), Query Frame = -1
Query:  446 MFMQGFDKKGRPIA-TVLGARHFQNK---------LGGLEEFKRFVVYILDKICSRMP---PGQEKFVVIGDLKGW-GYSNSDLR-AYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYGG 883
            +FMQG DK+  P+   V G   FQNK             E F R+ +  L+K    +     G      + DLK   G   ++LR A   AL +LQD YPE + K   ++ P+ ++  ++I+ PF+   +K K+VF    +   TLL+ I    +P  YGG
Sbjct:  388 VFMQGQDKENHPVCYNVYG--EFQNKDLYQKTFSDEEKRERFLRWRIQFLEKSIRNLDFVAGGVSTICQVNDLKNSPGPGKTELRLATKQALHLLQDNYPEFVSKQIFINVPWWYLAFYRIISPFMSQRSKSKLVFAGPSRSAETLLKYISPEHVPVQYGG 546          
BLAST of CX053639 vs. ExPASy Swiss-Prot
Match: SEC14_YEAST (SEC14 cytosolic factor OS=Saccharomyces cerevisiae GN=SEC14 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 52/154 (33.77%), Postives = 81/154 (52.60%), Query Frame = -1
Query:  443 DKKGRPIA-TVLGA--RHFQNKLGGLEEFKRFVVYILDKI-------CSRMPPGQ-EKFVVIGDLKGWGYSNS-DLRAYLGALS-ILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYGGQ 865
            DK GRP+    LGA   H  NK+   E   + +V+  + +       CSR      E    I DLKG   S++  + +Y+   S I Q+YYPER+GK +I++AP+ F T +++  PF+D  T  KI F+     +  LL++I    +P  +GG+
Sbjct:  115 DKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKI-FILGSSYQKELLKQIPAENLPVKFGGK 267          
The following BLAST results are available for this feature:
BLAST of CX053639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RSC5_DICDI2.179e-1534.90Random slug protein 5 OS=Dictyostelium discoideum ... [more]
YKJ1_YEAST8.568e-1235.83CRAL-TRIO domain-containing protein YKL091C OS=Sac... [more]
PATL5_ARATH5.553e-1131.68Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 S... [more]
SEC14_YEAST9.473e-1133.77SEC14 cytosolic factor OS=Saccharomyces cerevisiae... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_7C05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7C05-F10-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053639 ID=CX053639; Name=CX053639; organism=Citrus sinensis; type=EST; length=883bp
TTTTTTTTTTTTTTTTTATATAAGTACATGCATTGTGTGTTCTTACACAA
GGCTTAGAATAGAAATACATGAGCCGTAAAAGGGAACAAAAAGAAAGAGA
AAAATGGCTAAGATGAATCTGATATCTAACCCAGGGAATCATGCTTGCTT
ATTAGTTCAATAAACAAGGTGTTCTAAAACGGAAATACAATGACAATGGA
GACCCTTAATGTGAGATTTTCTCATCTGTATGCATAAGTTGTTAAATCCC
TGGTATGATTTTGTCTCCAGTTAACATGTTAAAAAGAGTTTGTCTCCACC
CGTTATCAACAAAACAGACTCTTTCCACGAAATCTGTAATCAGATTTATG
TTGCATTTTTGCAGATCGAAACATGCCCATATGTGCCATACGATTTTGCA
ACATTTTATCATTTATGTCTCTTGAATGGGAACCAAAGGCAGTTGGCCTC
CATATATTTCAGGTATCTGACTCTCGTCTATCTCTTCCAGCAGAGTTGAT
TTTAGCTTCTTGTCCTGCACAAATACTATCTTCTTCTTAGTATTGTTGTC
GATAAAAGGGTAAACAATTTTCCATACTGTCATGAATATGTATGGAGCAT
GCACAATAAACAACTTCCCAAGTCTTTCTGGGTAGTAGTCCTGCAGAATG
GAAAGAGCTCCAAGGTATGCTCGGAGATCACTGTTTGAATATCCCCACCC
TTTAAGGTCTCCGATCACAACGAACTTCTCTTGTCCAGGTGGCATCCTTG
AGCATATTTTGTCAAGAATATAGACCACAAAACGCTTGAATTCCTCAAGA
CCTCCTAATTTATTTTGGAAATGTCTTGCACCAAGAACTGTAGCTATAGG
TCGTCCTTTCTTATCAAACCCTTGCATAAACAT
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