DR403573

Overview
NameDR403573
Unique NameDR403573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403573 vs. ExPASy Swiss-Prot
Match: SY132_ARATH (Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.588e-54
Identity = 110/146 (75.34%), Postives = 119/146 (81.51%), Query Frame = 1
Query:    4 RGVYXXTGKXXDEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCXXXXXXXXXXXXXXXXXXKPWSSNKGA 441
            R VY  TG+  DE+TID+LIETG+SEQIFQKAIQEQGRGQ+MDTLAEIQERHDAVRDLE+KLL+LQQIFLDMAVLVDAQG+MLDNIESQVSSAVDHVQSGNTALQ+AK LQKNSRKWMC                  KPW  NK A
Sbjct:  160 RRVYTVTGERADEDTIDELIETGNSEQIFQKAIQEQGRGQVMDTLAEIQERHDAVRDLEKKLLDLQQIFLDMAVLVDAQGEMLDNIESQVSSAVDHVQSGNTALQRAKSLQKNSRKWMCIAIIILLIVVAVIVVGVLKPW-KNKSA 304          
BLAST of DR403573 vs. ExPASy Swiss-Prot
Match: SY131_ARATH (Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.329e-50
Identity = 102/146 (69.86%), Postives = 113/146 (77.40%), Query Frame = 1
Query:    4 RGVYXXTGKXXDEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCXXXXXXXXXXXXXXXXXXKPWSSNKGA 441
            R V+  TG+  DEE ID+LIETGDSEQIFQKAI+EQGRGQIMDTLAEIQERHDAVRDLE+KLL+LQQ+FLDMAVLVDAQG+MLDNIE+ VSSAVDHVQSGN  L KA K QK+SRKWMC                  KPW+   GA
Sbjct:  161 RRVFTVTGQRADEEAIDRLIETGDSEQIFQKAIREQGRGQIMDTLAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMVSSAVDHVQSGNNQLTKAVKSQKSSRKWMCIAILILLIIIIITVISVLKPWTQKNGA 306          
BLAST of DR403573 vs. ExPASy Swiss-Prot
Match: SY123_ARATH (Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.577e-35
Identity = 72/119 (60.50%), Postives = 92/119 (77.31%), Query Frame = 1
Query:    4 RGVYXXTGKXXDEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 360
            R  +  TG+  DEET+++LI +G+SE+  QKAIQEQGRGQ+MDTL+EIQERHD V+++ER LLEL Q+FLDMA LV+AQG+ML++IES VS A   V  G   L  AK LQ+N+RKW C
Sbjct:  162 RRYFTVTGQKADEETVEKLISSGESERFLQKAIQEQGRGQVMDTLSEIQERHDTVKEIERSLLELHQVFLDMAALVEAQGNMLNDIESNVSKASSFVMRGTDQLHGAKVLQRNNRKWAC 280          
BLAST of DR403573 vs. ExPASy Swiss-Prot
Match: SY121_ARATH (Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.590e-35
Identity = 72/146 (49.32%), Postives = 96/146 (65.75%), Query Frame = 1
Query:    1 RRGVYXXTGKXXDEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCXXXXXXXXXXXXXXXXXXKPWSSNKG 438
            +R  +  TG+  DE T+D+LI TG+SE+  QKAIQEQGRG+++DT+ EIQERHDAV+D+E+ L EL Q+FLDMAVLV+ QG  LD+IES V  A   ++ G   LQ A+  QKN+RKW C                  KPW+++ G
Sbjct:  169 QRRYFTVTGENPDERTLDRLISTGESERFLQKAIQEQGRGRVLDTINEIQERHDAVKDIEKNLRELHQVFLDMAVLVEHQGAQLDDIESHVGRASSFIRGGTDQLQTARVYQKNTRKWTCIAIIILIIIITVVVLAVLKPWNNSSG 314          
BLAST of DR403573 vs. ExPASy Swiss-Prot
Match: SY125_ARATH (Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.994e-35
Identity = 71/119 (59.66%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    4 RGVYXXTGKXXDEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 360
            R  +  TG+  DE+TID LI +G+SE   QKAIQEQGRGQI+DT++EIQERHDAV+++E+ LLEL Q+FLDMA LV+AQG  L+NIES V+ A   V+ G   LQ A++ QK+SRKW C
Sbjct:  154 RRYFTITGEKADEQTIDNLIASGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLLELHQVFLDMAALVEAQGQQLNNIESHVAKASSFVRRGTDQLQDAREYQKSSRKWTC 272          
BLAST of DR403573 vs. ExPASy Swiss-Prot
Match: SY122_ARATH (Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.627e-34
Identity = 75/145 (51.72%), Postives = 93/145 (64.14%), Query Frame = 1
Query:    4 RGVYXXTGKXXDEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCXXXXXXXXXXXXXXXXXXKPWSSNKG 438
            R  +  TG+  DE T+++LI TG+SE   QKAIQEQGRG+I+DT+ EIQERHDAV+D+E+ L EL Q+FLDMAVLV+ QG  LD+IE  V  A   V+SG   L KA+  QKN+RKW C                  KPW SN G
Sbjct:  169 RMCFTVTGEYPDEATLERLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKDIEKSLNELHQVFLDMAVLVEHQGAQLDDIEGNVKRANSLVRSGADRLVKARFYQKNTRKWTCFAILLLLIIVVLIVVFTVKPWESNGG 313          
BLAST of DR403573 vs. ExPASy Swiss-Prot
Match: SY124_ARATH (Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.656e-34
Identity = 68/119 (57.14%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    4 RGVYXXTGKXXDEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 360
            R  +  TG+  DE+TI+ LI +G+SE   QKAIQEQGRGQI+DT++EIQERHDAV+++E+ L+EL Q+FLDMA LV++QG  L++IES VS A   V+ G   LQ A++ QK+SRKW C
Sbjct:  159 RRYFTITGEQADEQTIENLISSGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNDIESHVSKASSFVRRGTDQLQDAREYQKSSRKWTC 277          
BLAST of DR403573 vs. ExPASy Swiss-Prot
Match: SY111_ARATH (Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.524e-25
Identity = 53/120 (44.17%), Postives = 85/120 (70.83%), Query Frame = 1
Query:    4 RGVYXXTGKXXDEETIDQLI-ETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 360
            R  +  TG+  ++E I+++I +    E+   +AIQE G+G++++T+ EIQ+R+DA +++E+ LLEL Q+FLDMAV+V++QG+ +D IE  V +A  +V  G   L+ AK  Q+NSRKWMC
Sbjct:  167 RRYFTVTGEHANDEMIEKIITDNAGGEEFLTRAIQEHGKGKVLETVVEIQDRYDAAKEIEKSLLELHQVFLDMAVMVESQGEQMDEIEHHVINASHYVADGANELKTAKSHQRNSRKWMC 286          
BLAST of DR403573 vs. ExPASy Swiss-Prot
Match: STX1A_DROME (Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 41/110 (37.27%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   22 TGKXXDEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 351
            TG+  +++ +++++E G+S    Q  I E    Q   TLA+I+ RH  +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  A+D+VQ+     +KA K Q  +R+
Sbjct:  159 TGRPTNDDELEKMLEEGNSSVFTQGIIMETQ--QAKQTLADIEARHQDIMKLETSIKELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTATQDTKKALKYQSKARR 266          
BLAST of DR403573 vs. ExPASy Swiss-Prot
Match: STX_APLCA (Syntaxin OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 41/110 (37.27%), Postives = 67/110 (60.91%), Query Frame = 1
Query:   22 TGKXXDEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 351
            TGK    E ++ +IE+G+     Q  I E    Q  +TLA+I+ RH+ +  LE  + +L  +F+DMA+LV++QG+M+D IE  V  AVD++++     +KA K Q  +R+
Sbjct:  158 TGKTTTNEELEDMIESGNPAIFTQGIIMETQ--QANETLADIEARHNDIMKLETSIRDLHDMFMDMAMLVESQGEMIDRIEYNVEQAVDYIETAKMDTKKAVKYQSKARR 265          
The following BLAST results are available for this feature:
BLAST of DR403573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
SY132_ARATH2.588e-5475.34Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=... [more]
SY131_ARATH1.329e-5069.86Putative syntaxin-131 OS=Arabidopsis thaliana GN=S... [more]
SY123_ARATH1.577e-3560.50Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=... [more]
SY121_ARATH4.590e-3549.32Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=... [more]
SY125_ARATH5.994e-3559.66Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=... [more]
SY122_ARATH6.627e-3451.72Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=... [more]
SY124_ARATH8.656e-3457.14Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=... [more]
SY111_ARATH2.524e-2544.17Syntaxin-related protein KNOLLE OS=Arabidopsis tha... [more]
STX1A_DROME6.890e-1537.27Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE... [more]
STX_APLCA1.535e-1437.27Syntaxin OS=Aplysia californica PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAC-PNP1241I16 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241I16 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403573 ID=DR403573; Name=DR403573; organism=Citrus sinensis; type=EST; length=675bp
CGCCGGGGAGTTTATANNNNAACCGGCAAAANNNCTGATGAAGAGACAAT
TGACCAATTGATTGAGACCGGGGACAGTGAACAGATATTCCAGAAAGCAA
TCCAAGAACAAGGTCGAGGCCAGATAATGGACACTCTGGCTGAAATTCAA
GAACGCCATGATGCTGTTAGAGATTTGGAAAGGAAGCTTCTTGAGTTACA
ACAGATCTTTCTGGATATGGCGGTGTTGGTAGATGCACAGGGAGACATGC
TGGACAATATAGAATCTCAGGTGTCAAGTGCTGTAGATCACGTGCAGTCA
GGCAATACTGCCCTCCAAAAGGCGAAAAAGCTACAGAAGAACTCCAGGAA
ATGGATGTGCATTGCCATCATCATCCTTCTCATTATTGTTGCAATCATAG
TTGTTGCGGTGATCAAGCCATGGAGTAGCAACAAAGGTGCTTAGCTGCTG
GACATTTGTTTGTATAGATATGAGTGGTCAATGGTCATTTGCCTTTTCTT
TACCCTTCCTGCCAATTTCTGTGATTCGAGTTCCATGTTCCGATTCTGTA
GCTCTTTCATTCCCTCCCTCGCCCTTTTCTGATCAAGTCAACTCTGTGTC
ATGCCATTTTAACCGAAGTATATATTTCTATATTCTTTGACATACTTTAA
AAAAAAAAAAAAAAAAAAAAAAAAA
back to top