CX053630

Overview
NameCX053630
Unique NameCX053630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 2.708e-77
Identity = 145/170 (85.29%), Postives = 152/170 (89.41%), Query Frame = -3
Query:  253 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSKK 762
            YS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPFTRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS          ETQLA +KSKK
Sbjct:    4 YSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 7.880e-77
Identity = 144/170 (84.71%), Postives = 152/170 (89.41%), Query Frame = -3
Query:  253 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSKK 762
            YS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPFTRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS          ETQLA +KSKK
Sbjct:    4 YSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 4.047e-73
Identity = 132/149 (88.59%), Postives = 140/149 (93.96%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS+EP NPTKS KA G DLRVHFKNTRETA A+RKLPLTKAKRYLEDV+AHKQAIPF R+CGGVGRTAQAK+RH NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL LS
Sbjct:    4 YSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILS 152          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.700e-71
Identity = 129/149 (86.58%), Postives = 136/149 (91.28%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS +P NPTKS KA G DLRVHFKNTRETA A+RK+PL KAKRYLEDV+AHKQAIPF R+C GVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct:    4 YSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.207e-70
Identity = 126/149 (84.56%), Postives = 136/149 (91.28%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS++P NPTKS KA G DLRVHFKNTRETA A+R++PL KAKRYLEDV+AHKQAIPF R+C GVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct:    4 YSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 8.192e-58
Identity = 111/149 (74.50%), Postives = 126/149 (84.56%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS +P+NP KSCKARGS LRVHFKNTRETA AI+K+ + KA RYL+DV+A KQ IPF RFCGGVGR AQAK    + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ +S
Sbjct:    4 YSIDPENPIKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAK-AFKHTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVS 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 8.478e-55
Identity = 106/149 (71.14%), Postives = 120/149 (80.54%), Query Frame = -3
Query:  319 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKN-RHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 762
            Y+ EP+NP KSCKARG DLRVHFKNTRETA AI+ + L KA RYL DV+  KQ IPF RF GGVGR AQAKN + P  QGRWP KSA+F++ LL+NAESNAEVK L+ DAL I HIQVN+A   RRRTYRAHGRINPYM+SPCHIE+ L
Sbjct:    4 YAIEPENPAKSCKARGEDLRVHFKNTRETAQAIKGMHLKKALRYLNDVIEKKQIIPFRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLLRNAESNAEVKMLNTDALVIDHIQVNRAAHLRRRTYRAHGRINPYMTSPCHIEMFL 152          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_BOMMO (60S ribosomal protein L17 OS=Bombyx mori GN=RpL17 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.107e-54
Identity = 111/169 (65.68%), Postives = 127/169 (75.15%), Query Frame = -3
Query:  256 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSK 762
            YS+EPDNP KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++V+  K+ IPF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ LS           T  A +K K
Sbjct:    4 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPAKKK 171          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 1.446e-54
Identity = 104/149 (69.80%), Postives = 123/149 (82.55%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    4 YSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CX053630 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 1.446e-54
Identity = 104/149 (69.80%), Postives = 123/149 (82.55%), Query Frame = -3
Query:  316 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 762
            YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    4 YSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
The following BLAST results are available for this feature:
BLAST of CX053630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RL172_ARATH2.708e-7785.2960S ribosomal protein L17-2 OS=Arabidopsis thalian... [more]
RL171_ARATH7.880e-7784.7160S ribosomal protein L17-1 OS=Arabidopsis thalian... [more]
RL17_MAIZE4.047e-7388.5960S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=... [more]
RL171_HORVU1.700e-7186.5860S ribosomal protein L17-1 OS=Hordeum vulgare PE=... [more]
RL172_HORVU3.207e-7084.5660S ribosomal protein L17-2 OS=Hordeum vulgare PE=... [more]
RL17_PODCA8.192e-5874.5060S ribosomal protein L17 OS=Podocoryne carnea GN=... [more]
RL17_SUBDO8.478e-5571.1460S ribosomal protein L17 OS=Suberites domuncula G... [more]
RL17_BOMMO1.107e-5465.6860S ribosomal protein L17 OS=Bombyx mori GN=RpL17 ... [more]
RL17_HUMAN1.446e-5469.8060S ribosomal protein L17 OS=Homo sapiens GN=RPL17... [more]
RL17_FELCA1.446e-5469.8060S ribosomal protein L17 OS=Felis catus GN=RPL17 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_7B12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7B12-D24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053630 ID=CX053630; Name=CX053630; organism=Citrus sinensis; type=EST; length=764bp
TTTTTTTTTTTTTTTTTCTAAGCTTCAAAATAAGCTTGAAAAGTCTTTAA
TTTTCATAAAGCTCCAACAGTATGACTGAGGATTCTAACAAAACAGTAAA
CTGGACTTAATATGAAATAAACAAAATATGATGTCTGATTTGACTAAATA
ACATCTCAGTCACTATTAAAGGTAAAAAAACTCACTTCATCAAGAACACA
AAATAAAAAATCAATGCACTCTCCAATTGCTATGCTAAACCTCAAACAAT
TACTTCTTTGATTTGCTAGTTGCCAACTGGGTCTCAGGCTCTTTCTTTAC
TGGCTCTTCCTTTTCAGATAAGGTCAACTCAATATGGCAGGGAGAGGACA
TGTAAGGATTAATTCTTCCATGAGCACGGTATGTGCGGCGCCTTTGCTTT
TGTGCCTGGTTGACTTGGATGTGAGAAATGTAGAGTGCATCAACATCTAA
ACCTTTCACCTCAGCATTACTCTCAGCATTCTTGAGCAAGTCAAGAATGA
ACTTTGCTGATTTGACAGGCCATCGTCCCTGTCCATTTGGATGCCTATTC
TTTGCCTGAGCAGTACGTCCAACACCACCGCAGAATCGTGTGAAGGGAAT
GGCCTGTTTATGGGCCATAACATCCTCCAAATACCTCTTAGCCTTCGTCA
AAGGCAATTTCCTGATGGCATGGGCAGTTTCTCTCGTGTTCTTAAAATGA
ACCCTGAGATCAGAGCCCCTGGCTTTGCAGGACTTGGTAGGATTGTCAGG
CTCTTTTGAGTACT
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