DR403568

Overview
NameDR403568
Unique NameDR403568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: PSMD2_RAT (26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus GN=Psmd2 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.640e-71
Identity = 130/221 (58.82%), Postives = 171/221 (77.38%), Query Frame = 1
Query:    4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDY 666
            +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+  ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S  A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+T DE L+PL                  PKTITGFQTH+TPVLLA G+RAELATE+++P++PILEGFVIL++N +Y
Sbjct:  686 LRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906          
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: PSMD2_PONAB (26S proteasome non-ATPase regulatory subunit 2 OS=Pongo abelii GN=PSMD2 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.640e-71
Identity = 130/221 (58.82%), Postives = 171/221 (77.38%), Query Frame = 1
Query:    4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDY 666
            +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+  ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S  A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+T DE L+PL                  PKTITGFQTH+TPVLLA G+RAELATE+++P++PILEGFVIL++N +Y
Sbjct:  686 LRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906          
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: PSMD2_MOUSE (26S proteasome non-ATPase regulatory subunit 2 OS=Mus musculus GN=Psmd2 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.640e-71
Identity = 130/221 (58.82%), Postives = 171/221 (77.38%), Query Frame = 1
Query:    4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDY 666
            +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+  ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S  A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+T DE L+PL                  PKTITGFQTH+TPVLLA G+RAELATE+++P++PILEGFVIL++N +Y
Sbjct:  686 LRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906          
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: PSMD2_HUMAN (26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens GN=PSMD2 PE=1 SV=3)

HSP 1 Score: 269.24 bits (687), Expect = 1.640e-71
Identity = 130/221 (58.82%), Postives = 171/221 (77.38%), Query Frame = 1
Query:    4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDY 666
            +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+  ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S  A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+T DE L+PL                  PKTITGFQTH+TPVLLA G+RAELATE+++P++PILEGFVIL++N +Y
Sbjct:  686 LRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906          
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: PSMD2_BOVIN (26S proteasome non-ATPase regulatory subunit 2 OS=Bos taurus GN=PSMD2 PE=1 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 1.640e-71
Identity = 130/221 (58.82%), Postives = 171/221 (77.38%), Query Frame = 1
Query:    4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDY 666
            +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+  ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S  A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+T DE L+PL                  PKTITGFQTH+TPVLLA G+RAELATE+++P++PILEGFVIL++N +Y
Sbjct:  686 LRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906          
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: PSMD2_DICDI (26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium discoideum GN=psmD2 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.621e-66
Identity = 127/218 (58.26%), Postives = 162/218 (74.31%), Query Frame = 1
Query:    4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKEN 657
            I+RA+PLALGLL  SNP++ +MD LS+LSHD D EVA  A++SLGLIG+GTNNARI GMLR L+ +Y KD +L F VRIAQGL+H+GKG +T+NPYHSDR L+SP A+ G++  L A LD+K ++  + HY+ + +V +M PRML+T+DE+LKPL                  PKTITGFQTH+TPVLL   +RAELAT+ YIPL+ ILEG VILK N
Sbjct:  663 IKRAIPLALGLLSPSNPRIAIMDILSKLSHDNDPEVAQGAILSLGLIGAGTNNARIGGMLRALAVFYGKDVHLFF-VRIAQGLLHLGKGTMTINPYHSDRTLMSPVAVGGLLALLHAGLDIKNILSTQSHYLFFSIVCSMYPRMLMTLDEDLKPLPVSVRVGQSVDIVGLAGKPKTITGFQTHTTPVLLGYNERAELATDDYIPLTNILEGIVILKPN 879          
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: RPN1_NEUCR (26S proteasome regulatory subunit rpn-1 OS=Neurospora crassa GN=rpn-1 PE=3 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.486e-64
Identity = 123/221 (55.66%), Postives = 163/221 (73.76%), Query Frame = 1
Query:    4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDY 666
            IRRAVPLA+GL+  SNP++ V DTLSR SHD D+EVA+ A+ ++GL+G+GTNNAR+A +LR L+SYY++D   LF VRIAQGL+HMGKG L+++P+H+DR +LS  A AG++  L A +D K  I  K HY+LY++V AM PRML+T+DE+LKPL+                 PKTITG+QT STPVLL  G+RAEL  ++YI LS  LEG VIL++N D+
Sbjct:  678 IRRAVPLAMGLISPSNPQMKVYDTLSRYSHDNDNEVAINAIFAMGLLGAGTNNARLAQLLRQLASYYHRDQESLFMVRIAQGLLHMGKGTLSVSPFHTDRQVLSNVATAGLLAVLVAMIDAKQFITSKSHYLLYWIVTAMHPRMLVTLDEDLKPLTVNVRVGQAVDVVGQAGRPKTITGWQTQSTPVLLGYGERAELEDDQYISLSSTLEGLVILRKNPDW 898          
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: RPN1_SCHPO (26S proteasome regulatory subunit rpn1 OS=Schizosaccharomyces pombe GN=rpn1 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 7.900e-58
Identity = 112/220 (50.91%), Postives = 158/220 (71.82%), Query Frame = 1
Query:    4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSD 663
            IR+A+PLALGLL  SNP++ + DTLSR SHD D +VA  A+ ++GL+G+GT+NAR+A +LR L+SYY+K++N LF VRIAQGL+++GKG +TLNPYH++R +L  TA AG++T + A LD    ++   H++LY + LA++PRML+T+ E+ + L                  PK ITG+ TH+TPVLL   +RAELATE Y PL+  LEG VILK+N++
Sbjct:  667 IRKAIPLALGLLSASNPQMRIFDTLSRYSHDNDLDVAYNAIFAMGLVGAGTSNARLAQLLRQLASYYHKESNALFMVRIAQGLLYLGKGTMTLNPYHTERQILGQTAFAGLMTVVLAMLDANTFVLDTSHWLLYAITLAIRPRMLITLGEDGQYLPVSVRVGQAVDVVGQAGRPKVITGWVTHTTPVLLHHNERAELATEAYTPLTS-LEGIVILKKNTE 885          
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: RPN1_YEAST (26S proteasome regulatory subunit RPN1 OS=Saccharomyces cerevisiae GN=RPN1 PE=1 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 4.067e-46
Identity = 94/224 (41.96%), Postives = 147/224 (65.62%), Query Frame = 1
Query:    4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDYGED 675
            IRR VPLA+G++ +S+P++ V DTL+R SHD D EV+M ++ ++GL G+GTNNAR+A +LR L+SYY ++ + LF  R+AQGL+H+GKG +T++ + +D  +L+   LA I+TT    +    ++  K+H + Y L   ++P+ +L +++  +P+                  PK ITG+ T STPVLL  G+RAEL T++YI  +  +EG VILK+N DY E+
Sbjct:  772 IRRMVPLAMGIVSVSDPQMKVFDTLTRFSHDADLEVSMNSIFAMGLCGAGTNNARLAQLLRQLASYYSREQDALFITRLAQGLLHLGKGTMTMDVF-NDAHVLNKVTLASILTTAVGLVSPSFML--KHHQLFYMLNAGIRPKFILALNDEGEPIKVNVRVGQAVETVGQAGRPKKITGWITQSTPVLLNHGERAELETDEYISYTSHIEGVVILKKNPDYREE 992          
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: RPN1_CANGA (26S proteasome regulatory subunit RPN1 OS=Candida glabrata GN=RPN1 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.231e-44
Identity = 91/224 (40.62%), Postives = 146/224 (65.18%), Query Frame = 1
Query:    4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDYGED 675
            IRR VPLA+GL+ +++P++ V DTL+R SHD D +V+M ++ ++GL G GTNNAR+A +LR L+SYY ++ + LF  R+AQGLVH+GKG +T++ + +D  +L+   LA ++T L   +    ++  K+H + Y L   ++P+ ++T++E  + +                  PKTITG+ T STPVLL  G+RAEL  ++YI  +  +EG VILK+N ++ E+
Sbjct:  762 IRRMVPLAMGLVSVADPQMKVFDTLTRFSHDPDLDVSMNSIFAMGLCGVGTNNARLAQLLRQLASYYSREQDALFITRLAQGLVHLGKGTMTMDIF-NDAHVLNKVTLASLLTVLVGLISPSFIL--KHHQLFYMLNSGVRPKFIITLNEEGEQIKVNVRIGQAVETVGQAGKPKTITGWITQSTPVLLGHGERAELENDEYISYTNNIEGVVILKKNPNFQEE 982          
The following BLAST results are available for this feature:
BLAST of DR403568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PSMD2_RAT1.640e-7158.8226S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_PONAB1.640e-7158.8226S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_MOUSE1.640e-7158.8226S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_HUMAN1.640e-7158.8226S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_BOVIN1.640e-7158.8226S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_DICDI4.621e-6658.2626S proteasome non-ATPase regulatory subunit 2 OS=... [more]
RPN1_NEUCR1.486e-6455.6626S proteasome regulatory subunit rpn-1 OS=Neurosp... [more]
RPN1_SCHPO7.900e-5850.9126S proteasome regulatory subunit rpn1 OS=Schizosa... [more]
RPN1_YEAST4.067e-4641.9626S proteasome regulatory subunit RPN1 OS=Saccharo... [more]
RPN1_CANGA2.231e-4440.6326S proteasome regulatory subunit RPN1 OS=Candida ... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241I08 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241I08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403568 ID=DR403568; Name=DR403568; organism=Citrus sinensis; type=EST; length=747bp
GGGATTCGTCGTGCAGTTCCGTTGGCTCTTGGTCTCCTATGTATATCAAA
CCCAAAGGTTAATGTTATGGACACATTAAGCCGGCTAAGCCATGATACTG
ATTCAGAAGTAGCTATGGCTGCCGTTATATCATTGGGTTTGATAGGGTCG
GGAACGAACAATGCTAGAATAGCTGGCATGCTTCGCAATCTCTCAAGCTA
CTACTACAAAGATGCCAATCTTCTGTTTTGTGTCCGAATTGCTCAAGGAT
TAGTGCACATGGGAAAGGGTCTCTTGACCCTTAACCCATACCATTCTGAT
CGCTTCTTGCTATCACCGACTGCTCTTGCTGGTATAGTTACCACTCTTTT
TGCATGTCTAGACATGAAGGCAGTCATCGTGGGGAAATATCATTATGTTC
TATACTTCCTTGTCTTGGCAATGCAGCCAAGAATGTTACTGACTGTAGAT
GAGAATCTCAAACCCCTGTCTGTTCCTGTTCGGGTGGGTCAGGCAGTTGA
TGTTGTTGGCCAGGCAGGTCGGCCCAAGACCATCACTGGTTTCCAGACAC
ACTCAACCCCAGTTCTTCTGGCTGCTGGTGATAGAGCAGAGTTGGCTACT
GAGAAATATATCCCTCTTTCGCCGATTCTTGAAGGCTTTGTCATCTTGAA
AGAGAACTCAGACTATGGAGAGGATCACTAGTTTTGTCACCCCAGGGCAA
AGGGAGTTCATTTATTGAAGTGTGTGTCATCATCATACCAGCTTTTA
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