DR403568
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: PSMD2_RAT (26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus GN=Psmd2 PE=2 SV=1) HSP 1 Score: 269.24 bits (687), Expect = 1.640e-71 Identity = 130/221 (58.82%), Postives = 171/221 (77.38%), Query Frame = 1 Query: 4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDY 666 +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+T DE L+PL PKTITGFQTH+TPVLLA G+RAELATE+++P++PILEGFVIL++N +Y Sbjct: 686 LRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: PSMD2_PONAB (26S proteasome non-ATPase regulatory subunit 2 OS=Pongo abelii GN=PSMD2 PE=2 SV=1) HSP 1 Score: 269.24 bits (687), Expect = 1.640e-71 Identity = 130/221 (58.82%), Postives = 171/221 (77.38%), Query Frame = 1 Query: 4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDY 666 +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+T DE L+PL PKTITGFQTH+TPVLLA G+RAELATE+++P++PILEGFVIL++N +Y Sbjct: 686 LRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: PSMD2_MOUSE (26S proteasome non-ATPase regulatory subunit 2 OS=Mus musculus GN=Psmd2 PE=1 SV=1) HSP 1 Score: 269.24 bits (687), Expect = 1.640e-71 Identity = 130/221 (58.82%), Postives = 171/221 (77.38%), Query Frame = 1 Query: 4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDY 666 +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+T DE L+PL PKTITGFQTH+TPVLLA G+RAELATE+++P++PILEGFVIL++N +Y Sbjct: 686 LRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: PSMD2_HUMAN (26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens GN=PSMD2 PE=1 SV=3) HSP 1 Score: 269.24 bits (687), Expect = 1.640e-71 Identity = 130/221 (58.82%), Postives = 171/221 (77.38%), Query Frame = 1 Query: 4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDY 666 +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+T DE L+PL PKTITGFQTH+TPVLLA G+RAELATE+++P++PILEGFVIL++N +Y Sbjct: 686 LRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: PSMD2_BOVIN (26S proteasome non-ATPase regulatory subunit 2 OS=Bos taurus GN=PSMD2 PE=1 SV=2) HSP 1 Score: 269.24 bits (687), Expect = 1.640e-71 Identity = 130/221 (58.82%), Postives = 171/221 (77.38%), Query Frame = 1 Query: 4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDY 666 +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY LV AMQPRML+T DE L+PL PKTITGFQTH+TPVLLA G+RAELATE+++P++PILEGFVIL++N +Y Sbjct: 686 LRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: PSMD2_DICDI (26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium discoideum GN=psmD2 PE=2 SV=1) HSP 1 Score: 251.136 bits (640), Expect = 4.621e-66 Identity = 127/218 (58.26%), Postives = 162/218 (74.31%), Query Frame = 1 Query: 4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKEN 657 I+RA+PLALGLL SNP++ +MD LS+LSHD D EVA A++SLGLIG+GTNNARI GMLR L+ +Y KD +L F VRIAQGL+H+GKG +T+NPYHSDR L+SP A+ G++ L A LD+K ++ + HY+ + +V +M PRML+T+DE+LKPL PKTITGFQTH+TPVLL +RAELAT+ YIPL+ ILEG VILK N Sbjct: 663 IKRAIPLALGLLSPSNPRIAIMDILSKLSHDNDPEVAQGAILSLGLIGAGTNNARIGGMLRALAVFYGKDVHLFF-VRIAQGLLHLGKGTMTINPYHSDRTLMSPVAVGGLLALLHAGLDIKNILSTQSHYLFFSIVCSMYPRMLMTLDEDLKPLPVSVRVGQSVDIVGLAGKPKTITGFQTHTTPVLLGYNERAELATDDYIPLTNILEGIVILKPN 879
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: RPN1_NEUCR (26S proteasome regulatory subunit rpn-1 OS=Neurospora crassa GN=rpn-1 PE=3 SV=2) HSP 1 Score: 246.128 bits (627), Expect = 1.486e-64 Identity = 123/221 (55.66%), Postives = 163/221 (73.76%), Query Frame = 1 Query: 4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDY 666 IRRAVPLA+GL+ SNP++ V DTLSR SHD D+EVA+ A+ ++GL+G+GTNNAR+A +LR L+SYY++D LF VRIAQGL+HMGKG L+++P+H+DR +LS A AG++ L A +D K I K HY+LY++V AM PRML+T+DE+LKPL+ PKTITG+QT STPVLL G+RAEL ++YI LS LEG VIL++N D+ Sbjct: 678 IRRAVPLAMGLISPSNPQMKVYDTLSRYSHDNDNEVAINAIFAMGLLGAGTNNARLAQLLRQLASYYHRDQESLFMVRIAQGLLHMGKGTLSVSPFHTDRQVLSNVATAGLLAVLVAMIDAKQFITSKSHYLLYWIVTAMHPRMLVTLDEDLKPLTVNVRVGQAVDVVGQAGRPKTITGWQTQSTPVLLGYGERAELEDDQYISLSSTLEGLVILRKNPDW 898
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: RPN1_SCHPO (26S proteasome regulatory subunit rpn1 OS=Schizosaccharomyces pombe GN=rpn1 PE=1 SV=2) HSP 1 Score: 223.787 bits (569), Expect = 7.900e-58 Identity = 112/220 (50.91%), Postives = 158/220 (71.82%), Query Frame = 1 Query: 4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSD 663 IR+A+PLALGLL SNP++ + DTLSR SHD D +VA A+ ++GL+G+GT+NAR+A +LR L+SYY+K++N LF VRIAQGL+++GKG +TLNPYH++R +L TA AG++T + A LD ++ H++LY + LA++PRML+T+ E+ + L PK ITG+ TH+TPVLL +RAELATE Y PL+ LEG VILK+N++ Sbjct: 667 IRKAIPLALGLLSASNPQMRIFDTLSRYSHDNDLDVAYNAIFAMGLVGAGTSNARLAQLLRQLASYYHKESNALFMVRIAQGLLYLGKGTMTLNPYHTERQILGQTAFAGLMTVVLAMLDANTFVLDTSHWLLYAITLAIRPRMLITLGEDGQYLPVSVRVGQAVDVVGQAGRPKVITGWVTHTTPVLLHHNERAELATEAYTPLTS-LEGIVILKKNTE 885
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: RPN1_YEAST (26S proteasome regulatory subunit RPN1 OS=Saccharomyces cerevisiae GN=RPN1 PE=1 SV=3) HSP 1 Score: 184.882 bits (468), Expect = 4.067e-46 Identity = 94/224 (41.96%), Postives = 147/224 (65.62%), Query Frame = 1 Query: 4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDYGED 675 IRR VPLA+G++ +S+P++ V DTL+R SHD D EV+M ++ ++GL G+GTNNAR+A +LR L+SYY ++ + LF R+AQGL+H+GKG +T++ + +D +L+ LA I+TT + ++ K+H + Y L ++P+ +L +++ +P+ PK ITG+ T STPVLL G+RAEL T++YI + +EG VILK+N DY E+ Sbjct: 772 IRRMVPLAMGIVSVSDPQMKVFDTLTRFSHDADLEVSMNSIFAMGLCGAGTNNARLAQLLRQLASYYSREQDALFITRLAQGLLHLGKGTMTMDVF-NDAHVLNKVTLASILTTAVGLVSPSFML--KHHQLFYMLNAGIRPKFILALNDEGEPIKVNVRVGQAVETVGQAGRPKKITGWITQSTPVLLNHGERAELETDEYISYTSHIEGVVILKKNPDYREE 992
BLAST of DR403568 vs. ExPASy Swiss-Prot
Match: RPN1_CANGA (26S proteasome regulatory subunit RPN1 OS=Candida glabrata GN=RPN1 PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.231e-44 Identity = 91/224 (40.62%), Postives = 146/224 (65.18%), Query Frame = 1 Query: 4 IRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXXXPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENSDYGED 675 IRR VPLA+GL+ +++P++ V DTL+R SHD D +V+M ++ ++GL G GTNNAR+A +LR L+SYY ++ + LF R+AQGLVH+GKG +T++ + +D +L+ LA ++T L + ++ K+H + Y L ++P+ ++T++E + + PKTITG+ T STPVLL G+RAEL ++YI + +EG VILK+N ++ E+ Sbjct: 762 IRRMVPLAMGLVSVADPQMKVFDTLTRFSHDPDLDVSMNSIFAMGLCGVGTNNARLAQLLRQLASYYSREQDALFITRLAQGLVHLGKGTMTMDIF-NDAHVLNKVTLASLLTVLVGLISPSFIL--KHHQLFYMLNSGVRPKFIITLNEEGEQIKVNVRIGQAVETVGQAGKPKTITGWITQSTPVLLGHGERAELENDEYISYTNNIEGVVILKKNPNFQEE 982 The following BLAST results are available for this feature:
BLAST of DR403568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DR403568 ID=DR403568; Name=DR403568; organism=Citrus sinensis; type=EST; length=747bpback to top |