DR403522

Overview
NameDR403522
Unique NameDR403522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:12..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403522 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.300e-75
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 3
Query:   87 MGKTRGMGAGRKLKSHRRRQGWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 512
            MGKTRGMGA RKLK+HRRRQ WADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:    1 MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of DR403522 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.101e-74
Identity = 138/142 (97.18%), Postives = 138/142 (97.18%), Query Frame = 3
Query:   87 MGKTRGMGAGRKLKSHRRRQGWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 512
            MGKT GMGA RKLKSHRR Q WADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:    1 MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of DR403522 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 273.478 bits (698), Expect = 7.890e-73
Identity = 136/142 (95.77%), Postives = 136/142 (95.77%), Query Frame = 3
Query:   87 MGKTRGMGAGRKLKSHRRRQGWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 512
            MGKTRGMGAGRKLK  R  Q WADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:    1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of DR403522 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 3.665e-70
Identity = 133/142 (93.66%), Postives = 134/142 (94.37%), Query Frame = 3
Query:   87 MGKTRGMGAGRKLKSHRRRQGWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 512
            MGKTRGMGAGRKLK  R  Q WADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:    1 MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of DR403522 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.402e-63
Identity = 115/143 (80.42%), Postives = 126/143 (88.11%), Query Frame = 3
Query:   87 MGKTRGMGAGRKLKSHRRRQGWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 512
            MGK RG+   RKLK+HRR Q W DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K+KKE+PRS
Sbjct:    1 MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQKKERPRS 143          
BLAST of DR403522 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.813e-62
Identity = 115/143 (80.42%), Postives = 125/143 (87.41%), Query Frame = 3
Query:   87 MGKTRGMGAGRKLKSHRRRQGWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 512
            MGK RG+   RK +SHRR Q W DK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:    1 MGKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of DR403522 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.381e-61
Identity = 112/143 (78.32%), Postives = 125/143 (87.41%), Query Frame = 3
Query:   87 MGKTRGMGAGRKLKSHRRRQGWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 512
            MGK RG+   RK  +HRR Q WADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:    1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of DR403522 vs. ExPASy Swiss-Prot
Match: RS23_PAPDA (40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.381e-61
Identity = 112/143 (78.32%), Postives = 125/143 (87.41%), Query Frame = 3
Query:   87 MGKTRGMGAGRKLKSHRRRQGWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 512
            MGK RG+   RK  +HRR Q WADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:    1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of DR403522 vs. ExPASy Swiss-Prot
Match: RS23_DROME (40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.304e-61
Identity = 114/143 (79.72%), Postives = 124/143 (86.71%), Query Frame = 3
Query:   87 MGKTRGMGAGRKLKSHRRRQGWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 512
            MGK RG+   RK  +HRR Q WADK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DG LNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:    1 MGKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of DR403522 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 233.802 bits (595), Expect = 6.928e-61
Identity = 114/143 (79.72%), Postives = 125/143 (87.41%), Query Frame = 3
Query:   87 MGKTRGMGAGRKLKSHRRRQGWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 512
            MGK RG+   RKL+SHRR Q W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
The following BLAST results are available for this feature:
BLAST of DR403522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_FRAAN1.300e-7597.8940S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES1.101e-7497.1840S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH7.890e-7395.7740S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH3.665e-7093.6640S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_LUMRU7.402e-6380.4240S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_DERVA2.813e-6280.4240S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_SPOFR2.381e-6178.3240S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_PAPDA2.381e-6178.3240S ribosomal protein S23 OS=Papilio dardanus GN=R... [more]
RS23_DROME5.304e-6179.7240S ribosomal protein S23 OS=Drosophila melanogast... [more]
RS23_RAT6.928e-6179.7240S ribosomal protein S23 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241F16 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241F16 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403522 ID=DR403522; Name=DR403522; organism=Citrus sinensis; type=EST; length=709bp
CGGGGGTTTACTCGCGGCGTCTCTCTTGCAACTCTCAAGCTCCAAAGTCG
TTCGTNNCAGTCAAAAATCCTCTTCGTAACGCCAACATGGGGAAGACACG
TGGAATGGGAGCGGGTCGCAAGCTGAAGAGCCACCGCAGAAGACAAGGGT
GGGCTGATAAGTCATACAAGAAATCCCACCTTGGCAATGAATGGAAGAAG
CCATTTGCTGGCTCTTCCCATGCAAAAGGCATTGTTCTTGAGAAAATCGG
TATCGAGGCAAAGCAGCCCAACTCCGCTATCAGAAAATGTGCTCGAGTTC
AGCTGATCAAGAATGGAAAGAAGATTGCAGCTTTCGTACCAAACGATGGT
TGTTTGAACTACATTGAAGAAAATGACGAGGTACTTATTGCAGGATTTGG
TCGAAAGGGGCATGCTGTGGGAGATATTCCTGGTGTTAGATTTAAGGTTG
TCAAGGTTTCAGGCGTGTCTCTTCTGGCCCTCTTCAAGGAGAAGAAGGAG
AAACCAAGATCCTAAACTCCTGATTCAAGATACTTCACCATGTTTTCTTT
TTTTAGCACTTTATTTTCATTAATCCCCGTTGATTACTGTTTTCCTTTAT
CATGTACTGCTGTTGAGAGAACTTTTTGGTTTTTTTCCCTCTGTTGAGAC
TATTAGTAAATTAGTATCTGTCTCTTCTGCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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