DR403520

Overview
NameDR403520
Unique NameDR403520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:115..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403520 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.419e-17
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVRAAETEGNCKCGP 260
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGP 54          
BLAST of DR403520 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.995e-13
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 3
Query:  102 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVRAAETEGNCKCG 257
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V    AAE +G CKCG
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCG 53          
BLAST of DR403520 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.715e-13
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVRAAETEGNCKCG 257
            MSD CGNCDCAD SQCVKKG+S   D VETD S++   VVM V AAE+ G CKCG
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIED-VVMGVPAAESGGKCKCG 52          
BLAST of DR403520 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.662e-11
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVRAAETEGNCKCGP 260
            MS  C NCDC+D SQC KKG S+    VET+   + T V+MD  AAE  GNCKCGP
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDT-VIMDAPAAENGGNCKCGP 55          
The following BLAST results are available for this feature:
BLAST of DR403520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MT3_CARPA3.419e-1769.64Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC2.995e-1363.46Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE8.715e-1367.27Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV3.662e-1157.14Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241F14 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241F14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403520 ID=DR403520; Name=DR403520; organism=Citrus sinensis; type=EST; length=600bp
GGGGATATCATCACANNNAATCAAAGCAAGTTTCGTACAATAAAGAGCCC
TCTATTTCCAGTTCTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGA
CACCTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGG
GAAGCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGC
ACCGTTGTTGTCATGGACGTTCGGGCTGCTGAGACTGAAGGTAACTGCAA
GTGCGGCCCCACCTGCGCTTGTGTGAACTGCACTTGTGTAGTCACTAATA
AGCAAACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATT
GTGGGGGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTC
TACTTCGTTTTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTG
TTGTGTCACCCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCAT
GTAATATATGGCCATGGCCATGACCGTGGCCTTGTGTGGTTTAATTTTAA
TGTACTATTGTTAGTCTACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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