DR403517

Overview
NameDR403517
Unique NameDR403517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13665 contig Csv1_Contig13665:404..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 1.814e-37
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    4 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 225
            HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
Sbjct:  108 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 6.893e-37
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    4 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 225
            HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:  108 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 6.893e-37
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    4 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 225
            HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:  108 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 9.002e-37
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 1
Query:    4 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 225
            HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA KA
Sbjct:  108 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGKA 181          
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 9.002e-37
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1
Query:    4 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 222
            HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN+ANK
Sbjct:  108 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180          
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.176e-36
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 1
Query:    4 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 225
            HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
Sbjct:  108 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.536e-36
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    4 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 225
            HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI++KA
Sbjct:  108 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKA 181          
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 2.005e-36
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1
Query:    4 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 225
            HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL+WLSNNIA+KA
Sbjct:  108 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASKA 181          
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 7.621e-36
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 1
Query:    4 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 225
            HRMLNEDELRDAVLLVFANKQDLPNAMNAAEI DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K+
Sbjct:  108 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKS 181          
BLAST of DR403517 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.100e-34
Identity = 69/74 (93.24%), Postives = 73/74 (98.65%), Query Frame = 1
Query:    4 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 225
            HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL+SLRQRHWYIQSTCAT+GEGLYEGLDWLS+NIA K+
Sbjct:  108 HRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATKS 181          
The following BLAST results are available for this feature:
BLAST of DR403517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
ARF2_ORYSJ1.814e-37100.00ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ORYSJ6.893e-3798.65ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_ARATH6.893e-3798.65ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF2_ARATH9.002e-3798.65ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_CHLRE9.002e-3798.63ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_CATRO1.176e-3698.65ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF1_SALBA1.536e-3697.30ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF_VIGUN2.005e-3697.30ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF1_DAUCA7.621e-3695.95ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF_MAIZE1.100e-3493.24ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAC-PNP1241F10 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403517 ID=DR403517; Name=DR403517; organism=Citrus sinensis; type=EST; length=485bp
GGGCATAGGATGTTGAATGAGGATGAGCTGCGAGATGCAGTGTTGCTTGT
ATTTGCTAACAAACAGGATCTTCCAAATGCAATGAATGCTGCTGAGATTA
CTGATAAGCTTGGCCTCCACTCCCTCAGGCAGCGCCACTGGTACATCCAG
AGCACCTGTGCAACCTCTGGTGAGGGTCTTTATGAAGGTCTGGATTGGCT
CTCCAACAACATCGCTAACAAGGCCTGAAGCTGTTAAGATCTTTTTGCGG
ACTGGCGATTCTGGATGCAGGGGTGAATATTATCTATTTTTTTTCTTTTT
TAACCCTTTTTGTTTGAGACGGTTGGGTTGTTGTGTTGTTTTGGCCCTAG
GATCTTTACAACTATATTGTACTAGAAGAATTGTTGGTTGGATACATGTA
CTCCAAGGTTTTTGGCTCGGTTTAGATATCTGTAATTTAAACTAATTTGG
TGCACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top