DR403515

Overview
NameDR403515
Unique NameDR403515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403515_ssr327 microsatellite DR403515_ssr327:327..341. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4300 contig Csv1_Contig4300:395..964. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403515 vs. ExPASy Swiss-Prot
Match: MUB3_ARATH (Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana GN=MUB3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.807e-17
Identity = 37/57 (64.91%), Postives = 50/57 (87.72%), Query Frame = 3 
Query:   18 KSRENNKTVGQCKIPYXEVPGGVIIMHVVVQPSLAKTETEKKIDDSPRKIVCSCSIL 188
            K  ENNKTVGQCK P+ ++ GGVI+MHVVVQPSLAK++TEKK+D +P+ ++C+C+IL
Sbjct:   62 KILENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSKTEKKVDKAPKAVICTCTIL 118
The following BLAST results are available for this feature:
BLAST of DR403515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MUB3_ARATH1.807e-1764.91Membrane-anchored ubiquitin-fold protein 3 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241F08 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403515 ID=DR403515; Name=DR403515; organism=Citrus sinensis; type=EST; length=570bp
GGGGATAAGCTCTGGTAAAATCTCGGGAGAATAACAAGACTGTTGGTCAG
TGTAAAATACCCTATNNNGAGGTACCAGGTGGTGTTATTATAATGCATGT
TGTTGTACAGCCTTCTCTAGCAAAGACTGAAACAGAAAAGAAGATCGATG
ATTCGCCCAGGAAAATTGTCTGCTCTTGTTCTATATTGTGAAGGAATGAA
TTTTAGTTGGAAAATTTGTTTATCTTGGTTGAATGTTAATACAAGCCTTT
CCTCGAGGCGTCATGTCTTCATTGTTGCTGTATTCTTGTGTACAAGTGCC
CAATGGAATCTGATGATTTGCTCTTTTTTTATTTTATTTTATTTTCTTTT
TCCCCCTCATTATCCTGAATTATTGTGACAGTTATCGTAGCTGTATGGGC
TACCATATGTAAAGACATTCTGCAATCATTGTCCAAAGAAATGGCTCTGC
AGTTGAATTACTTGTATAATGAATTAGTATTGTCACAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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