DR403508

Overview
NameDR403508
Unique NameDR403508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6098 contig Csv1_Contig6098:1..555. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403508 vs. ExPASy Swiss-Prot
Match: EF2_BETVU (Elongation factor 2 OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.494e-25
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 1
Query:    4 GFSSXLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 195
            GFSS LRA+TSGQAFPQCVFDHW+MM SDPLE GSQAS LV  IRKRKGLKEQMTPLSE+EDKL
Sbjct:  780 GFSSTLRASTSGQAFPQCVFDHWEMMPSDPLEAGSQASTLVSVIRKRKGLKEQMTPLSEFEDKL 843          
BLAST of DR403508 vs. ExPASy Swiss-Prot
Match: EF2_CHLKE (Elongation factor 2 OS=Chlorella kessleri PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.363e-21
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 1
Query:    4 GFSSXLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 195
            GF+S LRAAT+GQAFPQCVFDHW+ M SDP + GSQA+ LV+DIRKRKGLK +   LSEYEDKL
Sbjct:  782 GFTSTLRAATAGQAFPQCVFDHWEAMGSDPTQVGSQANTLVMDIRKRKGLKPEPAALSEYEDKL 845          
BLAST of DR403508 vs. ExPASy Swiss-Prot
Match: EF2_CAEEL (Elongation factor 2 OS=Caenorhabditis elegans GN=eft-2 PE=2 SV=4)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    4 GFSSXLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 195
            GF++ LR+ T GQAFPQCVFDHW ++  DPLE G++ +Q+VLD RKRKGLKE +  L  Y DK+
Sbjct:  789 GFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVPALDNYLDKM 852          
BLAST of DR403508 vs. ExPASy Swiss-Prot
Match: EF2_CRYPV (Elongation factor 2 OS=Cryptosporidium parvum PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.226e-16
Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    7 FSSXLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 195
            F++ LRAATSG+AFPQCVFDHW++++ DPLE GS+  +LV  IR+RK +KE++  L  Y DKL
Sbjct:  770 FTTVLRAATSGKAFPQCVFDHWELINGDPLEKGSKTEELVKAIRRRKNIKEEIPALDNYLDKL 832          
BLAST of DR403508 vs. ExPASy Swiss-Prot
Match: EF2_DROME (Elongation factor 2 OS=Drosophila melanogaster GN=Ef2b PE=1 SV=4)

HSP 1 Score: 83.5741 bits (205), Expect = 7.208e-16
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    4 GFSSXLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 195
            GF++ LR+ T GQAFPQCVFDHW ++  DP EP S+   +V D RKRKGLKE +  LS+Y DKL
Sbjct:  781 GFTADLRSNTGGQAFPQCVFDHWQVLPGDPSEPSSKPYAIVQDTRKRKGLKEGLPDLSQYLDKL 844          
BLAST of DR403508 vs. ExPASy Swiss-Prot
Match: EF2_SCHPO (Elongation factor 2 OS=Schizosaccharomyces pombe GN=eft1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    4 GFSSXLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 195
            GF+  LR AT+GQAFPQ VFDHW  MS DPL+P S+  Q+V + RKRKGLKE +   +EY D+L
Sbjct:  779 GFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVPDYTEYYDRL 842          
BLAST of DR403508 vs. ExPASy Swiss-Prot
Match: EF2_YEAST (Elongation factor 2 OS=Saccharomyces cerevisiae GN=EFT1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    4 GFSSXLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 195
            GF+  LR AT GQAFPQ VFDHW  + SDPL+P S+A ++VL  RKR G+KE++    EY DKL
Sbjct:  779 GFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842          
BLAST of DR403508 vs. ExPASy Swiss-Prot
Match: EF2_BOMMO (Translation elongation factor 2 OS=Bombyx mori GN=tef2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    4 GFSSXLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 195
            GF++ LR+ T GQAFPQCVFDHW ++  DP EP S+   +V + RKRKGLKE +  L++Y DKL
Sbjct:  781 GFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYLDKL 844          
BLAST of DR403508 vs. ExPASy Swiss-Prot
Match: EF2_KLULA (Elongation factor 2 OS=Kluyveromyces lactis GN=EFT1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    4 GFSSXLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 195
            GF+  LR AT GQAFPQ VFDHW  + +DPL+P ++A ++VL  RKR+G+KE++    EY DKL
Sbjct:  779 GFTGELRQATGGQAFPQMVFDHWATLGTDPLDPSTKAGEIVLAARKRQGMKEEVPGWQEYYDKL 842          
BLAST of DR403508 vs. ExPASy Swiss-Prot
Match: EF2_CRIGR (Elongation factor 2 OS=Cricetulus griseus GN=EEF2 PE=3 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.775e-14
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    4 GFSSXLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 195
            GF++ LR+ T GQAFPQCVFDHW ++  DP +  S+ SQ+V + RKRKGLKE +  L  + DKL
Sbjct:  795 GFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNSSRGSQVVAETRKRKGLKEGIPALDNFLDKL 858          
The following BLAST results are available for this feature:
BLAST of DR403508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
EF2_BETVU8.494e-2585.94Elongation factor 2 OS=Beta vulgaris PE=2 SV=1[more]
EF2_CHLKE4.363e-2173.44Elongation factor 2 OS=Chlorella kessleri PE=2 SV=... [more]
EF2_CAEEL1.112e-1659.38Elongation factor 2 OS=Caenorhabditis elegans GN=e... [more]
EF2_CRYPV4.226e-1658.73Elongation factor 2 OS=Cryptosporidium parvum PE=3... [more]
EF2_DROME7.208e-1659.38Elongation factor 2 OS=Drosophila melanogaster GN=... [more]
EF2_SCHPO9.413e-1659.38Elongation factor 2 OS=Schizosaccharomyces pombe G... [more]
EF2_YEAST4.672e-1557.81Elongation factor 2 OS=Saccharomyces cerevisiae GN... [more]
EF2_BOMMO6.102e-1556.25Translation elongation factor 2 OS=Bombyx mori GN=... [more]
EF2_KLULA1.359e-1454.69Elongation factor 2 OS=Kluyveromyces lactis GN=EFT... [more]
EF2_CRIGR1.775e-1454.69Elongation factor 2 OS=Cricetulus griseus GN=EEF2 ... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241E20 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241E20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403508 ID=DR403508; Name=DR403508; organism=Citrus sinensis; type=EST; length=555bp
GGGGGATTTTCCAGCNNNTTGAGAGCTGCAACCTCTGGACAGGCATTCCC
TCAATGTGTGTTTGATCACTGGGACATGATGTCATCTGATCCATTGGAGC
CGGGATCCCAGGCTTCACAGCTTGTTTTGGATATTAGGAAGAGGAAGGGT
TTGAAGGAACAGATGACCCCCCTCTCTGAATATGAAGACAAGCTGTAAGC
GCTTTTGCCATTATCGATTGCTGGCGACTAGATTCATTTTTTGCTGCCTT
TGGTTTTGTTCTGTTTTTTTCTTTGAAGGAAACAATGTTGACTTATCTGA
GTTTGTTGTTGTAGCCTCTGTTTATTTAAGTTTGGACGTTCAAATTCTGT
TATTCCATTCACTTTCTGATCTGATATGACTTGTGATGAATGTTAGTACT
GACTATGATTGCTTTTCATGTTATGCGTTCTCGCAATAATGACAAAGGTA
TATCTAGAAGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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