DR403501

Overview
NameDR403501
Unique NameDR403501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.201e-82
Identity = 153/198 (77.27%), Postives = 161/198 (81.31%), Query Frame = 2
Query:   11 LLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            LLGAC IHKDTNLAR  SEKLFELDP+NVGYHVLLSNI+SA+R+Y QAATVRQ  KKRKLAKAPG TLIE+G TPHVFTSGDQ HPQ   IY  LEKL GKMREAG+Q ET  A                SE+LAIAFGLIATEPGTEIRIIKNLRVCLDCHT TK ISK+T RVIVVRDANRFHHFKDGVCSCGDYW
Sbjct:  595 LLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.295e-52
Identity = 104/200 (52.00%), Postives = 130/200 (65.00%), Query Frame = 2
Query:    5 GALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            GA+LGAC IHK+ N A  A+E+LFEL+P++ GYHVLL+NIY A   + +   VR  + ++ L K PGC+++E+    H F SG   HP S  IYA LEKL   ++EAG+  +T                   SEKLAI+FGL+ T  GT I + KNLRVC DCH ATK+IS VTGR IVVRD  RFHHFK+G CSCGDYW
Sbjct:  611 GAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDT-NLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.284e-51
Identity = 97/199 (48.74%), Postives = 125/199 (62.81%), Query Frame = 2
Query:    8 ALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            +LL AC IHK+  LA ++  +LFELD  N GY++LLS+IY+    +     VR ++K R L K PG +L+E+ G  HVF  GD+ HPQ   IY  L +LN K+ EAG+ + T +                 SEKLAIAFG++ T PG+ + ++KNLRVC DCH   K ISK+  R  VVRDA RFHHFKDG CSCGDYW
Sbjct:  461 SLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.482e-48
Identity = 96/200 (48.00%), Postives = 126/200 (63.00%), Query Frame = 2
Query:    5 GALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            GALL AC +H + +L ++ASE LFE++PE+VGYHVLLSN+Y++   +     +R +   + L K PG + +EV     VF +G+Q HP    +Y  L  L  K++  G+  +                    SE+LAIAF LIAT   T IRI KNLRVC DCH+ TKFISK+T R I+VRD+NRFHHFK+GVCSCGDYW
Sbjct:  624 GALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.632e-48
Identity = 86/200 (43.00%), Postives = 131/200 (65.50%), Query Frame = 2
Query:    5 GALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            G LLGA  +H +T LA  A++K+F ++PEN G +VLLSN+Y++   +     +R  ++ + + K PG + IE+    H F+ GD+ HP+   I+A LE+L+ +M++AG+ ++T                   SE+LA+A+G++    G  IR+IKNLRVC DCH A K+++++TGR+I++RD NRFHHFKDG CSCGDYW
Sbjct:  582 GTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.607e-48
Identity = 96/201 (47.76%), Postives = 132/201 (65.67%), Query Frame = 2
Query:    5 GALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGD-QLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            GALLGAC I+K+T +A      L ++ PE+ GY+VLLSNIY+    + +  ++R ++K++ + K PG +LIE+ G  + FT GD Q HP+   I    E++ GK+R  G++  T  A                SEKLAIA+G++ T+PGT IRI+KNLRVC DCHT TK IS+V GR ++VRD NRFHHF++GVCSC DYW
Sbjct:  422 GALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.255e-47
Identity = 92/199 (46.23%), Postives = 129/199 (64.82%), Query Frame = 2
Query:    8 ALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            ++LG+C +H D  L +  +E L  L+ +N G +VLLSNIY++  DY   A VR ++K++ + K PG + IE+    H F +GD+ H +S  IY ML K++ +++  G+   T T                 SE+LAIA+GLI+T+PG+ ++I KNLRVC DCHT TK ISK+TGR IV+RD NRFHHF DG CSCGD+W
Sbjct:  434 SVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.795e-47
Identity = 90/199 (45.23%), Postives = 125/199 (62.81%), Query Frame = 2
Query:    8 ALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            +LL AC +H +  L    +E L +++PEN G +VLLSNIY++   + + A  R ++  + + K PGC+ IE+    H F  GD+ HP++  IY MLE++   + +AGF  +T                   SEKLAIAFGLI+T+PGT++ I+KNLRVC +CH ATK ISK+  R I+ RD  RFHHF+DGVCSC DYW
Sbjct:  543 SLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.227e-47
Identity = 95/205 (46.34%), Postives = 127/205 (61.95%), Query Frame = 2
Query:    5 GALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTE-----IRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            GALLGAC +H DT++  +A++KLF+L PE  GY+VLLSNIY+    + +   +R ++K + L K PG + +EV    H F  GD+ HPQS  IY  L+ L  KM+E G+  ++ +A                SEKLAI F L+ T+   E     IRI KNLR+C DCH A K IS++T R I++RD NRFH F+ GVCSCGDYW
Sbjct:  482 GALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686          
BLAST of DR403501 vs. ExPASy Swiss-Prot
Match: PPR84_ARATH (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.133e-47
Identity = 95/201 (47.26%), Postives = 127/201 (63.18%), Query Frame = 2
Query:    5 GALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGD-QLHPQSTAIYAMLEKLNGKMREAGFQTETVTAXXXXXXXXXXXXXXXXSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKDGVCSCGDYW 604
            GALLGAC  H   +LA VA++KLFE +P+N G +VLLS+I ++   +   A VR+ ++   ++K PGC+ IEVG   H+FT G  + HP+   I  MLEK +G +REAG+  +                    SE+LA+A+GL+    G  IR++KNLRVC DCH A K ISKVT R I++RDANRFHHF +G CSC DYW
Sbjct:  504 GALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704          
The following BLAST results are available for this feature:
BLAST of DR403501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
PP341_ARATH1.201e-8277.27Pentatricopeptide repeat-containing protein At4g30... [more]
PPR32_ARATH1.295e-5252.00Pentatricopeptide repeat-containing protein At1g11... [more]
PP258_ARATH9.284e-5148.74Pentatricopeptide repeat-containing protein At3g26... [more]
PP348_ARATH1.482e-4848.00Pentatricopeptide repeat-containing protein At4g33... [more]
PP301_ARATH5.632e-4843.00Pentatricopeptide repeat-containing protein At4g02... [more]
PP367_ARATH9.607e-4847.76Pentatricopeptide repeat-containing protein At5g06... [more]
PP354_ARATH1.255e-4746.23Pentatricopeptide repeat-containing protein At4g37... [more]
PPR21_ARATH2.795e-4745.23Pentatricopeptide repeat-containing protein At1g08... [more]
PP271_ARATH6.227e-4746.34Putative pentatricopeptide repeat-containing prote... [more]
PPR84_ARATH8.133e-4747.26Pentatricopeptide repeat-containing protein At1g56... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241E11 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403501 ID=DR403501; Name=DR403501; organism=Citrus sinensis; type=EST; length=746bp
GGGGGGTGCATTGCTTGGTGCTTGCATGATTCATAAAGACACAAACCTAG
CCCGTGTGGCTTCTGAAAAACTATTTGAATTAGACCCAGAAAATGTAGGA
TATCATGTCTTACTCTCAAATATTTATTCAGCTGAGAGAGACTATCTACA
GGCCGCAACAGTTCGACAAGTAGTTAAGAAGAGAAAGCTTGCAAAGGCTC
CTGGGTGCACTCTAATTGAGGTTGGTGGTACCCCACATGTCTTCACATCA
GGTGATCAGCTGCATCCCCAGTCAACTGCAATCTATGCAATGCTAGAGAA
GTTAAATGGAAAGATGAGAGAGGCTGGATTTCAGACAGAGACCGTCACAG
CTTTGCATGACGTGGAGGAGGAAGAGAAGGAGCTAATGATGAAGGTTCAC
AGTGAGAAGTTGGCTATAGCATTTGGCCTTATCGCCACTGAACCTGGAAC
TGAAATTAGGATTATTAAGAATCTCCGTGTTTGTTTAGACTGCCATACAG
CAACTAAATTTATATCCAAGGTTACAGGGAGGGTCATTGTGGTTAGGGAT
GCGAATAGATTCCACCATTTCAAGGATGGTGTATGTTCATGTGGAGACTA
CTGGTAAAAAGACACAAATGCATACCAGGTAGCCATTGGTCGGTCCTTCA
AATTTGTCTGCTGCACAGCTGCTGTTTAATGAGTCCAAATTTCCTCGAGT
CACCAACTATCCAGTGAAACCAGACGGGAAACCCATCCTACATGGC
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