DR403500

Overview
NameDR403500
Unique NameDR403500
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403500 vs. ExPASy Swiss-Prot
Match: SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.542e-41
Identity = 78/87 (89.66%), Postives = 84/87 (96.55%), Query Frame = 3
Query:  102 MQASDGFNINSQLGHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 362
            MQASD FNINSQL HLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQKMLLPCGLPPERE++
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87          
BLAST of DR403500 vs. ExPASy Swiss-Prot
Match: SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.542e-41
Identity = 78/87 (89.66%), Postives = 83/87 (95.40%), Query Frame = 3
Query:  102 MQASDGFNINSQLGHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 362
            MQASD FNINSQL HLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQKMLLPCGLPPERED+
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87          
BLAST of DR403500 vs. ExPASy Swiss-Prot
Match: SF3B5_DROME (Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.549e-25
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 3
Query:  120 FNINSQLGHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 362
            +NI+SQL HLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFAIAENES  R  +N M++ML PCG PPE+ +D
Sbjct:    5 YNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEKLED 85          
BLAST of DR403500 vs. ExPASy Swiss-Prot
Match: SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.507e-24
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 3
Query:  111 SDGFNINSQLGHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 362
            +D + I+SQL HLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Sbjct:    2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85          
BLAST of DR403500 vs. ExPASy Swiss-Prot
Match: SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.507e-24
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 3
Query:  111 SDGFNINSQLGHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 362
            +D + I+SQL HLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Sbjct:    2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85          
BLAST of DR403500 vs. ExPASy Swiss-Prot
Match: SF3B5_MOUSE (Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.396e-23
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 3
Query:  111 SDGFNINSQLGHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 362
            +D + I+SQL HLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML P G P ++ ++
Sbjct:    2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPSGPPADKPEE 85          
BLAST of DR403500 vs. ExPASy Swiss-Prot
Match: SF3B5_DICDI (Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.149e-20
Identity = 44/84 (52.38%), Postives = 62/84 (73.81%), Query Frame = 3
Query:  111 SDGFNINSQLGHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 362
            S+  ++NSQL HLQ +YVGTGHAD+++ EW  N  RDS +S++GH   L+ F+IAENES+GR  YN + KM+ PCG  P+ +D+
Sbjct:    2 SERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESVGRVRYNTLTKMISPCGPAPKIKDN 85          
BLAST of DR403500 vs. ExPASy Swiss-Prot
Match: YHV5_SCHPO (Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe GN=SPBC211.05 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.029e-13
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  111 SDGFNINSQLGHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPP 347
            +D     ++L  LQA+YVG G+A   ++EW VN  RD+ +S VGH P+LAY A A  E   +   N ++KM++PCG PP
Sbjct:    2 ADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPRVQVRKNLLEKMIMPCGPPP 80          
The following BLAST results are available for this feature:
BLAST of DR403500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SF3BB_ARATH1.542e-4189.66Uncharacterized protein At4g14342 OS=Arabidopsis t... [more]
SF3BA_ARATH1.542e-4189.66Uncharacterized protein At3g23325 OS=Arabidopsis t... [more]
SF3B5_DROME1.549e-2564.20Probable splicing factor 3B subunit 5 OS=Drosophil... [more]
SF3B5_HUMAN6.507e-2457.14Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF... [more]
SF3B5_BOVIN6.507e-2457.14Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B... [more]
SF3B5_MOUSE9.396e-2355.95Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf... [more]
SF3B5_DICDI1.149e-2052.38Splicing factor 3B subunit 5 OS=Dictyostelium disc... [more]
YHV5_SCHPO3.029e-1344.30Uncharacterized protein C211.05 OS=Schizosaccharom... [more]
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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241E10 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403500 ID=DR403500; Name=DR403500; organism=Citrus sinensis; type=EST; length=602bp
GGGGACTGGTATTTCTTTTTTGCTCTTCAGCTTCAAACCCCTGCCATCGC
ATTCGCTCTTGCTGCCTTTTTTGTTTTCATTCTCAAAAAAGCACATTAAG
AATGCAGGCAAGTGATGGGTTTAATATAAACTCCCAGCTAGGGCATCTGC
AAGCCAAATACGTTGGTACTGGTCATGCTGATTTGAACAGATTTGAGTGG
GCTGTGAACATTCAGCGTGATAGCTATGCGTCTTATGTTGGGCATTATCC
TATTTTGGCCTACTTTGCTATTGCCGAGAATGAATCTATTGGAAGGGAAC
ACTATAACTTTATGCAGAAAATGCTTTTGCCTTGTGGTCTGCCCCCTGAA
AGAGAAGATGATTGAGAGTTTAAGATGCTCTTTCTGAGAACGGAACATTT
TGGGCTCCAGCTTTCTCCAGGCTTGAGGAGCATTTGTGATATTGCTAGGT
GTTCGCTTTCAAGTAACAATGTTCATGTGAGACTGACAAAAACTGTGTAG
TATTGTGTACTGGGTTGAATACTCTAGTGTTATTGTGATCCTTGGATTTA
TATAAATTTTTATGTAGTTGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
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