DR403496

Overview
NameDR403496
Unique NameDR403496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403496 vs. ExPASy Swiss-Prot
Match: PUB51_ARATH (U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 59/149 (39.60%), Postives = 85/149 (57.05%), Query Frame = 3
Query:  309 DTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAV--SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLH--------------VAEERPVPSFFLCPI 707
            D  +  +    T P G+F Y DPEY RTGV+TP+SD Y+FG+I+LQL+T R  +GLA  + +A+    GK + ILD  AGDWP   A+ +V +GL+C E+  R+RPD+   ++  LE+L               +      P+ F CPI
Sbjct:  585 DPSHASTVFNETGPVGTFFYIDPEYQRTGVVTPESDIYAFGIILLQLVTARSAMGLAHSIEKALRDQTGKFTEILDKTAGDWPVKEAKEMVMIGLRCAEMRKRDRPDLGKEILPVLERLKEVASIARNMFADNLIDHHHNAPTHFYCPI 733          
BLAST of DR403496 vs. ExPASy Swiss-Prot
Match: PUB33_ARATH (U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23
Identity = 56/130 (43.08%), Postives = 77/130 (59.23%), Query Frame = 3
Query:  354 GSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVA------------EERPVPSFFLCPI 707
            G+  Y DPE   +G LTPKSD YSFG+I+L+LLTGR  + ++ EV+ A+  G L+ +LDPLAGDWP   A +L  L L+CCE     RPD+   + + LE +  +            E R  P +F+CPI
Sbjct:  642 GTVAYLDPEASSSGELTPKSDVYSFGIILLRLLTGRPALRISNEVKYALDNGTLNDLLDPLAGDWPFVQAEQLARLALRCCETVSENRPDLGTEVWRVLEPMRASSGGSSSFHLGRNEHRIAPPYFICPI 771          
BLAST of DR403496 vs. ExPASy Swiss-Prot
Match: PUB34_ARATH (U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 55/136 (40.44%), Postives = 75/136 (55.15%), Query Frame = 3
Query:  327 SFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERPV---------PSFFLCPI 707
            + +R++   G+  Y DPEYHRTG + PKSD Y+FG+IILQLLT R P G+   V  AV  G L+ +LD    DWP      L  +GL+C E   R+RPD+   ++  L++L       V         PS + CPI
Sbjct:  598 TMYRNSVLAGTLHYIDPEYHRTGTIRPKSDLYAFGIIILQLLTARNPSGIVPAVENAVKKGTLTEMLDKSVTDWPLAETEELARIGLKCAEFRCRDRPDLKSEVIPVLKRLVETANSKVKKEGSNLRAPSHYFCPI 733          
BLAST of DR403496 vs. ExPASy Swiss-Prot
Match: PUB53_ARATH (Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 56/140 (40.00%), Postives = 80/140 (57.14%), Query Frame = 3
Query:  327 SFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAV---SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEER----------PVPSFFLCPI 707
            + ++ T+P G+  Y DPEY RTG ++PKSD Y+FG+IILQLLTG+  + L   V  A+   +  +L  ILD  AG+WP    R+L  L LQC EL  ++RPD+   ++  LE L    ++            PS F CP+
Sbjct:  618 TMYKQTSPVGTLCYIDPEYQRTGRISPKSDVYAFGMIILQLLTGQQAMALTYTVETAMENNNDDELIQILDEKAGNWPIEETRQLAALALQCTELRSKDRPDLEDQILPVLESLKKVADKARNSLSAAPSQPPSHFFCPL 757          
BLAST of DR403496 vs. ExPASy Swiss-Prot
Match: PUB52_ARATH (U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 52/145 (35.86%), Postives = 80/145 (55.17%), Query Frame = 3
Query:  306 EDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAV-SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERP----------VPSFFLCPI 707
            +D +   +  + T+P G+  Y DPEY RTG+++PKSD YS G++ILQL+T +  + +   V  A+    +  +ILD  AG WP    R L  LGL C E+  R+RPD+   ++  LE+L    ++            PS F+CP+
Sbjct:  639 QDDVSSRTIFKQTSPVGTLCYIDPEYQRTGIISPKSDVYSLGVVILQLITAKPAIAITHMVEEAIGDDAEFMAILDKKAGSWPISDTRELAALGLCCTEMRRRDRPDLKDQIIPALERLRKVADKAQNLLSRTPSGPPSHFICPL 783          
BLAST of DR403496 vs. ExPASy Swiss-Prot
Match: PUB35_ARATH (U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 54/138 (39.13%), Postives = 77/138 (55.80%), Query Frame = 3
Query:  327 SFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAV-SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEER----------PVPSFFLCPI 707
            + ++ T+P G+  Y DPEY RTG ++ KSD YSFG+I+LQLLT +  + L   V  A+ S  +   ILD  AG+WP    R L  L L C EL G++RPD+   ++  LE L    E+            P+ F+CP+
Sbjct:  637 TIYKQTSPVGTLCYIDPEYQRTGRISSKSDIYSFGMILLQLLTAKPAIALTHFVESAMDSNDEFLKILDQKAGNWPIEETRELAALALCCTELRGKDRPDLKDQILPALENLKKVAEKARNSFSGVSTQPPTHFICPL 774          
BLAST of DR403496 vs. ExPASy Swiss-Prot
Match: PUB32_ARATH (U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = 3
Query:  357 SFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSL----------VKELEQLHVAEE---RPVPSFFLCPI 707
            S P+ DP Y  +  +T +SD Y+FG+I+LQLLT R   G+  +V+ A+    +S++LD  AGDWP    ++L ++ ++CC+     RPD+   L          V   E    A +   R  PS +LCPI
Sbjct:  614 SDPHVDPHYFVSREMTLESDIYAFGIILLQLLTRRPVSGILRDVKCALENDNISAVLDNSAGDWPVARGKKLANVAIRCCKKNPMNRPDLAVVLRFIDRMKAPEVPSSETSSYANQNVPRRPPSHYLCPI 743          
BLAST of DR403496 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 43/126 (34.13%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  333 HRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV----GLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLH---VAEERPVPS 689
            H +T  KG+  Y DPEY+ +  LT KSD YS G++ L++LTG  P+     +  EV  A   G + S++D   G +     +R ++L ++CC+     RP +   +V+ELE ++     EE+P  S
Sbjct:  791 HVTTIVKGTPGYVDPEYYLSHRLTEKSDVYSLGIVFLEILTGMRPISHGRNIVREVNEACDAGMMMSVIDRSMGQYSEECVKRFMELAIRCCQDNPEARPWML-EIVRELENIYGLIPKEEKPYSS 915          
BLAST of DR403496 vs. ExPASy Swiss-Prot
Match: Y1755_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07550 OS=Arabidopsis thaliana GN=At1g07550 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 38/104 (36.54%), Postives = 63/104 (60.58%), Query Frame = 3
Query:  342 TAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAVSC-------GKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDIT 629
            T   G+F Y DPEYH+T +L+ KSD YSFG+++L++++G+  + L+ E    V         G + SI+DP L  D+ T  A ++V+L + C     +ERP+++
Sbjct:  718 TVVAGTFGYLDPEYHKTSLLSMKSDVYSFGVVLLEIISGQDVIDLSRENCNIVEWTSFILENGDIESIVDPNLHQDYDTSSAWKVVELAMSCVNRTSKERPNMS 821          
BLAST of DR403496 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 41/118 (34.75%), Postives = 58/118 (49.15%), Query Frame = 3
Query:  333 HRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV----GLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEE 674
            H ST  KG+  Y DPEY  T  LT KSD YS G+++L+L TG  P+     +  E+  A   G + S +D      P     +   L L+CC    RE  D  PS+ + + +L +  E
Sbjct:  786 HVSTVVKGTPGYLDPEYFLTHQLTDKSDVYSLGVVLLELFTGMQPITHGKNIVREINIAYESGSILSTVDKRMSSVPDECLEKFATLALRCC----REETDARPSMAEVVRELEIIWE 899          
The following BLAST results are available for this feature:
BLAST of DR403496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PUB51_ARATH1.365e-2439.60U-box domain-containing protein 51 OS=Arabidopsis ... [more]
PUB33_ARATH1.155e-2343.08U-box domain-containing protein 33 OS=Arabidopsis ... [more]
PUB34_ARATH1.668e-2240.44U-box domain-containing protein 34 OS=Arabidopsis ... [more]
PUB53_ARATH3.146e-2140.00Putative U-box domain-containing protein 53 OS=Ara... [more]
PUB52_ARATH7.008e-2135.86U-box domain-containing protein 52 OS=Arabidopsis ... [more]
PUB35_ARATH5.933e-2039.13U-box domain-containing protein 35 OS=Arabidopsis ... [more]
PUB32_ARATH2.852e-1435.38U-box domain-containing protein 32 OS=Arabidopsis ... [more]
Y5374_ARATH3.153e-1334.13Probable LRR receptor-like serine/threonine-protei... [more]
Y1755_ARATH1.014e-1136.54Probable LRR receptor-like serine/threonine-protei... [more]
Y1684_ARATH1.325e-1134.75Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241E02 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403496 ID=DR403496; Name=DR403496; organism=Citrus sinensis; type=EST; length=708bp
GGCCGGGGGGAGAAAAATCTTATCATTATNNNNNGNNNNGAACCCAAAGT
CAAGACAAAAGTCAAGCACTCAACGGAAGCTGAGCTTCATTTTCGTAGAA
ACTATAAAATTAACGAGGTACCAAGGAAAGAAAATCTCACTGCTTTTCTT
TTTACGCTTCCCAACTTAACCATCACATGTATGCGTCAATGTCATGACTC
ACCAATAATAATACCCACCTGCGTAACCCGAACCGGAACCCGGACCGGAC
TCTACCATTCCTTCAATGGAGGTTCTAAGACCACCGCCACAACACAGGCC
GACCCGAGGACACCCTTTATTTGCCCAGTTTTCATCGGAGTACTGCGCCA
AAGGGTTCTTTTCCATATGCAGATCCAGAGTACCACAGGACTGGAGTCCT
AACTCCCAAGTCCGACAGTTACTCCTTTGGGTTGATAATCCTACAGCTAC
TTACTGGAAGGCTGCCAGTTGGGTTAGCAGGTGAAGTGCGAAGAGCTGTG
TCGTGCGGGAAGTTATCATCCATTTTGGATCCATTAGCTGGAGATTGGCC
TACGTTTGTTGCAAGGCGTTTAGTGGACCTGGGATTGCAATGCTGTGAAT
TGTACGGTAGGGAGCGACCCGATATCACACCATCTCTGGTAAAGGAATTG
GAACAGCTGCATGTTGCAGAGGAACGACCGGTTCCATCATTCTTTTTGTG
CCCCATTC
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