DR403495

Overview
NameDR403495
Unique NameDR403495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403495_ssr9 microsatellite DR403495_ssr9:9..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:121..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403495 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.410e-22
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 3
Query:   87 MSATCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 284
            MS TCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of DR403495 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.546e-19
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 3
Query:   93 ATCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 287
            +TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    2 STCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of DR403495 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.009e-18
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 3
Query:   87 MSATCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 281
            MS  CGNCDCAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of DR403495 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.973e-16
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 3
Query:   87 MSATCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 281
            MS+ C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of DR403495 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.973e-16
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 3
Query:   87 MSATCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 284
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of DR403495 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.288e-15
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 3
Query:   87 MSATCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 284
            MS  CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DR403495 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.288e-15
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 3
Query:   87 MSATCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 284
            MS  CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DR403495 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.323e-12
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 3
Query:   87 MSATCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 284
            MS  CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of DR403495 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 3
Query:   87 MSATCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 284
            MS  CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of DR403495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA1.410e-2268.18Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC5.546e-1960.00Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE8.009e-1866.15Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV1.973e-1658.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO1.973e-1659.09Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ8.288e-1553.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI8.288e-1553.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ1.323e-1248.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI5.028e-1246.97Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241E01 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403495 ID=DR403495; Name=DR403495; organism=Citrus sinensis; type=EST; length=567bp
GGGATCACAGCAAAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTCTATT
TCCAGTTTTAAGTTCTAAGTTCTAAGCTCAATCAACATGTCGGCCACCTG
CGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCA
GCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTT
GTTGTCATGGACGTTCAGGCTGCTGAGGCTGAAGGTAACTGCAAGTGCGG
CCCCACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAA
ACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGG
GGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAAAAGAAAAATTCTCTA
CTTCGTTTTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTT
GTGTCACCCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGT
AATATATGGCCATGGCCATGACCGTGGCCTTGTGTGGTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
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