DR403492

Overview
NameDR403492
Unique NameDR403492
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:81..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.687e-55
Identity = 103/116 (88.79%), Postives = 111/116 (95.69%), Query Frame = 1
Query:  118 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 465
            AAEEGQVIGCHTVEAWNEQLQK N+TK L+VVDFTASWCGPCRFIAPFLA LAKKLPNV FLKVDVDELK+VA +WAVE+MPTFMFLKEGKI+DKVVGAKK+ELQQTIAKH+ATAS
Sbjct:    2 AAEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAS 117          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.689e-53
Identity = 98/113 (86.73%), Postives = 106/113 (93.81%), Query Frame = 1
Query:  118 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 456
            A+EEGQVI CHTVE WNEQLQK+NE+K LVVVDFTASWCGPCRFIAPF A LAKKLPNVLFLKVD DELKSVA+DWA++AMPTFMFLKEGKI+DKVVGAKK+ELQ TIAKHLA
Sbjct:    2 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.772e-49
Identity = 94/115 (81.74%), Postives = 104/115 (90.43%), Query Frame = 1
Query:  121 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 465
            AEEGQVIG HTV+AWNE LQK  + K+L+VVDFTASWCGPC+FIA F A LAKK+P V FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKK+ELQQTIAKH+++ S
Sbjct:    2 AEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTS 116          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.129e-46
Identity = 85/119 (71.43%), Postives = 103/119 (86.55%), Query Frame = 1
Query:  109 EMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 465
            +  ++EEGQV GCH VE WNE  +K  ETK+LVVVDFTASWCGPCRFIAP LA +AKK+P+V+FLKVDVDELK+V+ +W+VEAMPTF+F+K+GK VD+VVGAKKEELQQTI KH A A+
Sbjct:    5 DATSSEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPAT 123          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.033e-37
Identity = 67/110 (60.91%), Postives = 92/110 (83.64%), Query Frame = 1
Query:  121 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 450
            A EG+VI CHT+E WNE+++ +NE+K+L+V+DFTASWC PCRFIAP  A +AKK  NV+F K+DVDEL++VA ++ VEAMPTF+F+KEG I+D+VVGA K+E+ + + KH
Sbjct:    2 AGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.007e-36
Identity = 70/118 (59.32%), Postives = 92/118 (77.97%), Query Frame = 1
Query:  118 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 468
            AAEEGQVIGCH ++ W  QL  + ++ +L+V+DFTASWC PCR IAP  A LAKK + + +F KVDVDEL++VA ++ VEAMPTF+ +K+G +VDKVVGA+KE+L  TIAKH   A+A
Sbjct:    2 AAEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTGVATA 119          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 6.539e-36
Identity = 71/118 (60.17%), Postives = 90/118 (76.27%), Query Frame = 1
Query:  118 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 468
            AAEEGQVIGCHT + W  QL K+ E+ +L+V+DFTASWC PCR IAP    LAKK + + +F KVDVDEL+SVA ++ VEAMPTF+F+K G++VDK+VGA KE+LQ  I KH    +A
Sbjct:    2 AAEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGVTTA 119          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.457e-35
Identity = 69/117 (58.97%), Postives = 88/117 (75.21%), Query Frame = 1
Query:  118 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 468
            AAEEG VI CH  + ++ Q+ K+ E  ++V++DFTASWCGPCRFIAP  A  AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:    2 AAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.457e-35
Identity = 69/117 (58.97%), Postives = 88/117 (75.21%), Query Frame = 1
Query:  118 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 468
            AAEEG VI CH  + ++ Q+ K+ E  ++V++DFTASWCGPCRFIAP  A  AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:    2 AAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of DR403492 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.903e-35
Identity = 66/110 (60.00%), Postives = 89/110 (80.91%), Query Frame = 1
Query:  121 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAGLAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 450
            AEE QVI CHTV+ WNE+ QK+ ++ +L+V+DFTASWCGPCR I P+++ LAKK P+V F KVDVD+LK VA ++ VEAMP+F+ LKEG+ V+++VGA+K+EL   IA H
Sbjct:    2 AEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
The following BLAST results are available for this feature:
BLAST of DR403492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
TRXH_RICCO3.687e-5588.79Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH7.689e-5386.73Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC1.772e-4981.74Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC3.129e-4671.43Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH5_ARATH2.033e-3760.91Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_BRANA5.007e-3659.32Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH4_ARATH6.539e-3660.17Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_ORYSJ1.457e-3558.97Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI1.457e-3558.97Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_FAGES1.903e-3560.00Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241D20 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241D20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403492 ID=DR403492; Name=DR403492; organism=Citrus sinensis; type=EST; length=646bp
CNGGCCGGGGAAAGANNNNNCATACGCAAANNNCCAAGAGCAAGAAAGCG
AGGGAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGC
GGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCAC
ACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACA
GCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTCA
TTGCTCCTTTCTTGGCAGGGCTGGCCAAGAAACTGCCTAATGTCCTGTTT
CTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAGT
GGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACA
AGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCAT
CTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGG
CTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTA
TTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAA
TTTACTGTTCTATGAAGCTCATACTGTGGTCTTTACAATAACTTAA
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