DR403488

Overview
NameDR403488
Unique NameDR403488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length306
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403488 vs. ExPASy Swiss-Prot
Match: PSB2A_ARATH (Proteasome subunit beta type-2-A OS=Arabidopsis thaliana GN=PBD1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.485e-38
Identity = 74/84 (88.10%), Postives = 82/84 (97.62%), Query Frame = 1
Query:   55 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFT 306
            MECVFGLVG+GF I+ ADTSAVHSIL+HK+NEDKIMVLDSHKL+AASGEPGDRVQFTE++QKNVSLY+FRNGIPLTTAAAANFT
Sbjct:    1 MECVFGLVGNGFAIVAADTSAVHSILLHKNNEDKIMVLDSHKLVAASGEPGDRVQFTEYVQKNVSLYKFRNGIPLTTAAAANFT 84          
BLAST of DR403488 vs. ExPASy Swiss-Prot
Match: PSB2B_ARATH (Proteasome subunit beta type-2-B OS=Arabidopsis thaliana GN=PBD2 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.920e-37
Identity = 72/84 (85.71%), Postives = 80/84 (95.24%), Query Frame = 1
Query:   55 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFT 306
            MECVFGLVG+GF I+ ADTSAVHSIL+HK+ EDKIM LDSHKL+AASGEPGDRVQFTE++QKNVSLYQFRNGIPL+TAAAANFT
Sbjct:    1 MECVFGLVGNGFAIVAADTSAVHSILLHKNKEDKIMTLDSHKLVAASGEPGDRVQFTEYVQKNVSLYQFRNGIPLSTAAAANFT 84          
BLAST of DR403488 vs. ExPASy Swiss-Prot
Match: PSB2_ORYSJ (Proteasome subunit beta type-2 OS=Oryza sativa subsp. japonica GN=PBD1 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 4.497e-32
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 1
Query:   55 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFT 306
            MECV G+VG  F ++ ADTSAV SILVHK++EDK+MVLDSHKL+ ASGEPGDRVQFTEFIQKN+ LYQFRN IPL+TAA ANFT
Sbjct:    1 MECVIGVVGRDFAVVAADTSAVQSILVHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFIQKNLHLYQFRNNIPLSTAATANFT 84          
BLAST of DR403488 vs. ExPASy Swiss-Prot
Match: PSB2_DICDI (Proteasome subunit beta type-2 OS=Dictyostelium discoideum GN=psmB2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.305e-18
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 1
Query:   55 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANF 303
            ME +      G  + +AD+S  HSI+  K +EDKI+ +D HKL+ ++GE GDRVQFTE+I KN+ LY  RN  P++T AAANF
Sbjct:    1 METLLAFKVKGGVLCLADSSVNHSIVKMKDDEDKILEIDGHKLLLSAGEAGDRVQFTEYISKNIKLYSLRNSYPMSTPAAANF 83          
BLAST of DR403488 vs. ExPASy Swiss-Prot
Match: PSB2_CRYNE (Probable proteasome subunit beta type-2 OS=Cryptococcus neoformans GN=CPR1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.421e-14
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   55 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAA 297
            MEC FG+ G  + IL +D  A  SI+  KS+E+K+  L  H  +A SGEPGD   F E+I++N+ LY  RN  PL   AA+
Sbjct:    1 MECSFGITGKDYVILASDMGAGRSIVRMKSDENKLKTLGPHLAMAFSGEPGDTNNFAEYIERNMRLYNIRNHFPLLPPAAS 81          
BLAST of DR403488 vs. ExPASy Swiss-Prot
Match: PSB2_NEUCR (Probable proteasome subunit beta type-2 OS=Neurospora crassa GN=15E6.60 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.099e-13
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   55 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANF 303
            M  + G+ G  FTI+ A  +A+    + K+++DK   L+ H L+A SGE GD VQF E+ Q N  LY  RNG  L+ +A ANF
Sbjct:    1 MYVLLGITGKDFTIIAASKAAMRGATILKASDDKTRSLNKHTLMAFSGEAGDTVQFAEYTQANAQLYSMRNGTDLSPSALANF 83          
BLAST of DR403488 vs. ExPASy Swiss-Prot
Match: PSB2_RAT (Proteasome subunit beta type-2 OS=Rattus norvegicus GN=Psmb2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.580e-13
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   55 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFT 306
            ME + G+ G  + ++ +D  A  +I+  K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFT
Sbjct:    1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFT 84          
BLAST of DR403488 vs. ExPASy Swiss-Prot
Match: PSB2_MOUSE (Proteasome subunit beta type-2 OS=Mus musculus GN=Psmb2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.580e-13
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   55 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFT 306
            ME + G+ G  + ++ +D  A  +I+  K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFT
Sbjct:    1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFT 84          
BLAST of DR403488 vs. ExPASy Swiss-Prot
Match: PSB2_HUMAN (Proteasome subunit beta type-2 OS=Homo sapiens GN=PSMB2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.580e-13
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   55 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFT 306
            ME + G+ G  + ++ +D  A  +I+  K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFT
Sbjct:    1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFT 84          
BLAST of DR403488 vs. ExPASy Swiss-Prot
Match: PSB2_BOVIN (Proteasome subunit beta type-2 OS=Bos taurus GN=PSMB2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.580e-13
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   55 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFT 306
            ME + G+ G  + ++ +D  A  +I+  K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFT
Sbjct:    1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFT 84          
The following BLAST results are available for this feature:
BLAST of DR403488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PSB2A_ARATH5.485e-3888.10Proteasome subunit beta type-2-A OS=Arabidopsis th... [more]
PSB2B_ARATH7.920e-3785.71Proteasome subunit beta type-2-B OS=Arabidopsis th... [more]
PSB2_ORYSJ4.497e-3277.38Proteasome subunit beta type-2 OS=Oryza sativa sub... [more]
PSB2_DICDI6.305e-1850.60Proteasome subunit beta type-2 OS=Dictyostelium di... [more]
PSB2_CRYNE9.421e-1445.68Probable proteasome subunit beta type-2 OS=Cryptoc... [more]
PSB2_NEUCR2.099e-1343.37Probable proteasome subunit beta type-2 OS=Neurosp... [more]
PSB2_RAT3.580e-1342.86Proteasome subunit beta type-2 OS=Rattus norvegicu... [more]
PSB2_MOUSE3.580e-1342.86Proteasome subunit beta type-2 OS=Mus musculus GN=... [more]
PSB2_HUMAN3.580e-1342.86Proteasome subunit beta type-2 OS=Homo sapiens GN=... [more]
PSB2_BOVIN3.580e-1342.86Proteasome subunit beta type-2 OS=Bos taurus GN=PS... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241D14 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241D14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403488 ID=DR403488; Name=DR403488; organism=Citrus sinensis; type=EST; length=306bp
GGGGGACAACAAAATCAAATCAAAANNNNNCCGACAACAACAGAACNNNN
AGGAATGGAGTGCGTATTTGGTCTTGTCGGCGACGGCTTCACAATCTTAG
TGGCCGACACGTCGGCAGTCCACAGTATCTTGGTTCATAAATCGAACGAG
GACAAGATCATGGTCCTCGACTCTCACAAACTCATCGCCGCCAGTGGCGA
ACCCGGTGACCGTGTTCAATTTACGGAGTTCATTCAGAAGAATGTGTCGT
TGTATCAATTTCGTAACGGAATTCCATTGACTACTGCTGCGGCGGCGAAC
TTTACC
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