CX053473

Overview
NameCX053473
Unique NameCX053473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053473 vs. ExPASy Swiss-Prot
Match: APO4_ARATH (APO protein 4, mitochondrial OS=Arabidopsis thaliana GN=APO4 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.547e-28
Identity = 60/128 (46.88%), Postives = 85/128 (66.41%), Query Frame = 3
Query:  438 FCPEVFIGEKGHLIQTCRGFRRRAKNRVHEWISGSLDDILVPVEAFHLRKMFQPVIEHNQRFDFERVPAVVELCWQAGADPTDQ-----DLHLNTRNSDGIVGGVHGVESLSPEDLTVIANGTLKAWE 806
            FC EVF+G++GHLI+TCR + RR  NR+HEW+ GS++DILVPVE++HL  + Q VI H +RFD++RVPA++ELC QAGA   ++     ++H N + S+        + SL   DL  +    L AWE
Sbjct:   90 FCSEVFVGKEGHLIETCRSYIRRGNNRLHEWVPGSINDILVPVESYHLHNISQGVIRHQERFDYDRVPAILELCCQAGAIHPEEILQYSEIHDNPQISE------EDIRSLPAGDLKYVGANALMAWE 211          

HSP 2 Score: 80.4925 bits (197), Expect = 1.235e-14
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 1
Query:  229 WGELSNGQRF-YSSKF---------DLKKLRPMIMKRIENRAKDYPIRDMVPVAREVLKARALLIRGVSTLIKVFPVQAC-FALKCLLGRK 468
            W +LS+ QR  YS+           DL+KLRPMI+KRIENRAKDYP++++VPVA E+L AR  LI  ++ L+KVFPV  C F  +  +G++
Sbjct:    9 WRKLSSFQRASYSTTSSRNNKLKLDDLRKLRPMILKRIENRAKDYPVKEIVPVAEEILIARKNLISNIAALLKVFPVLTCKFCSEVFVGKE 99          
BLAST of CX053473 vs. ExPASy Swiss-Prot
Match: APO1_ARATH (APO protein 1, chloroplastic OS=Arabidopsis thaliana GN=APO1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.088e-18
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  441 CPEVFIGEKGHLIQTCRGFRRRAKNRVHEWISGSLDDILVPVEAFHLRKMFQPVIEHNQRFDFERVPAVVELCWQAGAD 677
            C  V +   GH I+ C G     +   H W+ G+++D+L+PVE++H+   F   I+H  RF++ER+PA+VELC QAG +
Sbjct:  159 CGAVHVANVGHNIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVELCIQAGVE 237          

HSP 2 Score: 35.039 bits (79), Expect = 2.088e-18
Identity = 21/54 (38.89%), Postives = 33/54 (61.11%), Query Frame = 1
Query:  280 KKLRPM-IMKRIENRAKDYPIRDMVPVAREVLKARALLIRGVSTLIKVFPVQAC 438
            KKL  M I K+++       + ++VPVA +V+    LLI+G++ L+ V PV AC
Sbjct:  103 KKLAQMGIEKQLDPPKNGLLVPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFAC 156          
BLAST of CX053473 vs. ExPASy Swiss-Prot
Match: APO2_ARATH (APO protein 2, chloroplastic OS=Arabidopsis thaliana GN=APO2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.390e-16
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:  438 FCPEVFIGEKGHLIQTCRGFRRRAKNRVHEWISGSLDDILVPVEAFHLRKMFQPVIEHNQRFDFERVPAVVELCWQAGAD 677
            +C E+ +G  GH  ++C+G     +  +HEW +  ++D++VP+EA+HL       I H++RF   RVPAVVELC Q G +
Sbjct:  165 WCNEIHVGPYGHPFKSCKGPNTSQRKGLHEWTNSVIEDVIVPLEAYHLFDRLGKRIRHDERFSIPRVPAVVELCIQGGVE 244          

HSP 2 Score: 30.4166 bits (67), Expect = 1.390e-16
Identity = 21/63 (33.33%), Postives = 31/63 (49.21%), Query Frame = 1
Query:  286 LRPMIMKRIENRAKDYP------------IRDMVPVAREVLKARALLIRGVSTLIKVFPVQAC 438
            LR    +R++N  KD P            ++ +VP+A +V  AR  LI  +  L+KV  V AC
Sbjct:  102 LRRAARERVKNN-KDKPKRPLPPPKNGMVVKSLVPLAYKVYNARIRLINNLHRLMKVVRVNAC 163          

HSP 3 Score: 68.9366 bits (167), Expect = 3.694e-11
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 3
Query:  438 FCPEVFIGEKGHLIQTCRGFRRRAKNRVHEWISGSLDDILVPVEAFHLRKMFQPVIEHNQRFDFERVPAVVELCWQAGA 674
            +CPEV +G  GH  Q C  F+ + +N  H W S  LDD++ P   +H+  +  P ++   R  + + PAVVE+C QAGA
Sbjct:  335 YCPEVHVGPTGHKAQNCGAFKHQQRNGQHGWQSAVLDDLIPPRYVWHVPDVNGPPMQRELRSFYGQAPAVVEICAQAGA 413          
The following BLAST results are available for this feature:
BLAST of CX053473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
APO4_ARATH2.547e-2846.88APO protein 4, mitochondrial OS=Arabidopsis thalia... [more]
APO1_ARATH2.088e-1840.51APO protein 1, chloroplastic OS=Arabidopsis thalia... [more]
APO2_ARATH1.390e-1640.00APO protein 2, chloroplastic OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_6C07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-6C07-F13-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053473 ID=CX053473; Name=CX053473; organism=Citrus sinensis; type=EST; length=810bp
CTGCTCTCTCATCATTTTGTCGAAACCCTAAAATACCCTCACTTTTAATT
CTCTTCTTTGAGCTTCTCCGATTTAGGATCATTGCTCGAATTGACGGGGG
TTTTCACGTTTGATAAATGTTTTGATGCTCATGAAGTGTTTGATGTAAGT
TCTCAGAGGTCTGTTTATATTTCAATACAGAGCTTTAATATTTTGATGGC
CTTGAGGAGGAAACTATGGGTAGATTTTTGGGGAGAGTTATCAAACGGGC
AGAGATTTTACAGTTCGAAATTTGACTTGAAGAAACTGAGGCCAATGATT
ATGAAAAGAATCGAAAACCGAGCGAAGGATTATCCGATTCGCGACATGGT
TCCTGTAGCTCGTGAAGTTCTTAAAGCCAGAGCTCTGTTGATCCGAGGCG
TCTCCACGCTAATTAAAGTTTTCCCAGTCCAGGCCTGTTTTGCCCTGAAG
TGTTTATTGGGGAGAAAGGTCATTTAATTCAAACTTGTCGTGGGTTTAGG
CGCAGAGCTAAGAATCGAGTTCATGAATGGATTAGTGGTAGTTTGGATGA
TATACTTGTCCCTGTGGAAGCATTTCACTTGCGTAAAATGTTTCAACCTG
TGATTGAACATAACCAAAGATTTGACTTTGAGCGTGTTCCTGCTGTTGTT
GAGCTATGCTGGCAGGCTGGTGCTGATCCGACTGATCAAGATCTGCATCT
CAACACTCGGAATTCTGATGGTATTGTTGGTGGTGTTCATGGAGTTGAGT
CTTTGTCACCTGAGGACCTGACAGTGATAGCTAATGGAACTTTGAAAGCA
TGGGAGACCC
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