CX053472

Overview
NameCX053472
Unique NameCX053472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053472 vs. ExPASy Swiss-Prot
Match: APO4_ARATH (APO protein 4, mitochondrial OS=Arabidopsis thaliana GN=APO4 PE=2 SV=2)

HSP 1 Score: 304.679 bits (779), Expect = 4.552e-82
Identity = 140/242 (57.85%), Postives = 179/242 (73.97%), Query Frame = -1
Query:  139 FCPEVFIGEKGHLIQTCRGFRRRAKNRVHEWISGSLDDILVPVEAFHLRKMFQPVIEHNQRFDFERVPAVVELCWQAGADPTDQ-----DLHLNTRNSDGIVGGVHGVESLSPEDLTVIANGTLKAWETLRSGVQRLTLVYPVKVCEHCSEVHVGPSGHKARLCGVFKYESWRGTHFWKKAGVDDLVPPKIVWHRRPQDPPVLLDEGRGYYGHAPAVVDLCTKAGVVPPTKYFTMIKVLGRS 849
            FC EVF+G++GHLI+TCR + RR  NR+HEW+ GS++DILVPVE++HL  + Q VI H +RFD++RVPA++ELC QAGA   ++     ++H N + S+        + SL   DL  +    L AWE +R+GV++L LVYP KVC+ C EVHVGPSGHKARLCGVFKYESWRGTH+W+KAGV+DLVP K+VWHRRPQDP VL+DEGR YYGHAPA+V LC+  G + P KY   +K  G S
Sbjct:   90 FCSEVFVGKEGHLIETCRSYIRRGNNRLHEWVPGSINDILVPVESYHLHNISQGVIRHQERFDYDRVPAILELCCQAGAIHPEEILQYSEIHDNPQISE------EDIRSLPAGDLKYVGANALMAWEKVRAGVKKLLLVYPSKVCKRCKEVHVGPSGHKARLCGVFKYESWRGTHYWEKAGVNDLVPEKMVWHRRPQDPVVLVDEGRSYYGHAPAIVSLCSHTGAIVPVKYACKMKPQGLS 325          
BLAST of CX053472 vs. ExPASy Swiss-Prot
Match: APO2_ARATH (APO protein 2, chloroplastic OS=Arabidopsis thaliana GN=APO2 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.450e-45
Identity = 94/255 (36.86%), Postives = 141/255 (55.29%), Query Frame = -1
Query:  169 FCPEVFIGEKGHLIQTCRGFRRRAKNRVHEWISGSLDDILVPVEAFHLRKMFQPVIEHNQRFDFERVPAVVELCWQAGADPTDQDLHLNTR------NSDGIVGG---------------------VHGVESLSPEDLTV-IANGTLKAWETLRSGVQRLTLVYPVKVCEHCSEVHVGPSGHKARLCGVFKYESWRGTHFWKKAGVDDLVPPKIVWHRRPQDPPVLLDEGRGYYGHAPAVVDLCTKAGVVPPTKY 849
            +C E+ +G  GH  ++C+G     +  +HEW +  ++D++VP+EA+HL       I H++RF   RVPAVVELC Q G +  +       +       S+ +                        V  +   S E+ TV +A  TL+AWE +R+G ++L  +Y V+VC +C EVHVGP+GHKA+ CG FK++   G H W+ A +DDL+PP+ VWH    + P +  E R +YG APAVV++C +AG V P  Y
Sbjct:  165 WCNEIHVGPYGHPFKSCKGPNTSQRKGLHEWTNSVIEDVIVPLEAYHLFDRLGKRIRHDERFSIPRVPAVVELCIQGGVEIPEFPAKRRRKPIIRIGKSEFVDADETELPDPEPQPPPVPLLTELPVSEITPPSSEEETVSLAEETLQAWEEMRAGAKKLMRMYRVRVCGYCPEVHVGPTGHKAQNCGAFKHQQRNGQHGWQSAVLDDLIPPRYVWHVPDVNGPPMQRELRSFYGQAPAVVEICAQAGAVVPEHY 419          
BLAST of CX053472 vs. ExPASy Swiss-Prot
Match: APO1_ARATH (APO protein 1, chloroplastic OS=Arabidopsis thaliana GN=APO1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.015e-42
Identity = 90/264 (34.09%), Postives = 138/264 (52.27%), Query Frame = -1
Query:  151 CPEVFIGEKGHLIQTCRGFRRRAKNRVHEWISGSLDDILVPVEAFHLRKMFQPVIEHNQRFDFERVPAVVELCWQAGADPTDQDLHLNTR-----------------------NSDGIVGGVHGVESL---------SPEDLTVIANGTLKAWETLRSGVQRLTLVYPVKVCEHCSEVHVGPSGHKARLCGVFKYESWRGTHFWKKAGVDDLVPPKIVWHRRPQDPPVLLDEGRGYYGHAPAVVDLCTKAGVVPPTKYFTMIKV 846
            C  V +   GH I+ C G     +   H W+ G+++D+L+PVE++H+   F   I+H  RF++ER+PA+VELC QAG +  +      T+                        S  +   +  +++L         +PED+  IA  T+ A+E +R GV +L   + VK C +CSEVHVGP GH  +LCG FK++   G H W+ A VD++ PP  VWH R      L    R +YG APA+V++C  +G   P +Y  M+++
Sbjct:  159 CGAVHVANVGHNIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVELCIQAGVEIPEYPCRRRTQPIRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDTLGVFERYPPPTPEDIPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCGEFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEICMHSGARVPQRYKAMMRL 422          

HSP 2 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 38/115 (33.04%), Postives = 55/115 (47.83%), Query Frame = -1
Query:  178 DLTVIANGTLKAWETLRSGVQRLTLVYPVKVCEHCSEVHVGPSGHKARLCGVFKYESWRGTHFWKKAGVDDLVPPKIVWHRRPQDPPVLLDEGRGYYGHAPAVVDLCTKAGVVPP 522
            +L  +A+  +  W+ L  G+ +L  V PV  C  C  VHV   GH  R C        RG+H W K  ++D++ P   +H        +  E R  Y   PA+V+LC +AGV  P
Sbjct:  125 NLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVELCIQAGVEIP 239          
BLAST of CX053472 vs. ExPASy Swiss-Prot
Match: APO3_ARATH (APO protein 3, mitochondrial OS=Arabidopsis thaliana GN=APO3 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.072e-34
Identity = 81/258 (31.40%), Postives = 135/258 (52.33%), Query Frame = -1
Query:  151 CPEVFIGEKGHLIQTCRGFRRRAKNRVHEWISGSLDDILVPVEAFHL-RKMFQPVIEHNQRFDFERVPAVVELCWQAGADPTDQDLHLNTRNSDGIVGGVHGVESLS------------------------PEDLTVIANGTLKAWETLRSGVQRLTLVYPVKVCEHCSEVHVGPSGHKARLCGVFKYESWRGTHFWKKAGVDDLVPPKIVWH-RRPQDPPVLLDEGRGYYGHAPAVVDLCTKAGVVPPTKYFTMIKV 846
            C EV IG++GH I+TC G    +++  H W  G + D+++  + FHL  +  +P + H++RF   ++ AV+ELC QAG D         ++    I G +   E ++                         + L  ++  T+++W  +  GV++L   Y V  C +C E+ VGP GHK R+C   K++   G H W++A +DD+V P  VWH R P D  VL +  + +YG APAV+++C + G   P +Y +M+++
Sbjct:  131 CAEVHIGKQGHEIRTCTGPGSGSRSATHVWKRGRVSDVVLFPKCFHLYDRAVKPRVIHDERFTVPKISAVLELCIQAGVDLEKFPSKRRSKPVYSIEGRIVDFEDVNDGNSELAVTSTTTLIQEDDRCKEEKKSLKELSFETMESWFEMVLGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATIDDVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRL 388          
The following BLAST results are available for this feature:
BLAST of CX053472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
APO4_ARATH4.552e-8257.85APO protein 4, mitochondrial OS=Arabidopsis thalia... [more]
APO2_ARATH4.450e-4536.86APO protein 2, chloroplastic OS=Arabidopsis thalia... [more]
APO1_ARATH6.015e-4234.09APO protein 1, chloroplastic OS=Arabidopsis thalia... [more]
APO3_ARATH2.072e-3431.40APO protein 3, mitochondrial OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_6C07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-6C07-F13-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053472 ID=CX053472; Name=CX053472; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTTTGGAAGTAAATAAAATCTTGGGCTAATAGAAATGGTTTTGTT
ACAGATCTAAGCCTTAAATGCATCACAATTCAAACCTATCTAACAATGTA
ACTTGCAGATGTCCTCAATGCTCAGAGCCAACAGGTTCTGATCGACCTAG
AACTTTGATCATTGTAAAATACTTGGTTGGAGGGACAACACCAGCCTTTG
TGCACAAATCCACTACTGCTGGTGCATGCCCATAATAACCCCGTCCTTCA
TCCAAAAGCACAGGAGGGTCCTGAGGGCGTCGATGCCAAACAATCTTTGG
AGGTACCAAATCATCTACCCCAGCCTTCTTCCAAAAGTGGGTTCCTCGCC
AGCTCTCATATTTAAACACTCCACAAAGCCGAGCCTTATGCCCAGATGGC
CCAACATGAACTTCTGAACAATGCTCACAAACTTTTACTGGATAAACTAA
TGTCAATCTTTGAACACCCGATCTGAGGGTCTCCCATGCTTTCAAAGTTC
CATTAGCTATCACTGTCAGGTCCTCAGGTGACAAAGACTCAACTCCATGA
ACACCACCAACAATACCATCAGAATTCCGAGTGTTGAGATGCAGATCTTG
ATCAGTCGGATCAGCACCAGCCTGCCAGCATAGCTCAACAACAGCAGGAA
CACGCTCAAAGTCAAATCTTTGGTTATGTTCAATCACAGGTTGAAACATT
TTACGCAAGTGAAATGCTTCCACAGGGACAAGTATATCATCCAAACTACC
ACTAATCCATTCATGAACTCGATTCTTAGCTCTGCGCCTAAACCCACGAC
AAGTTTGAATTAAATGACCTTTCTCCCCAATAAACACTTCAGGGCAAAAC
AGGCCTGGACTGGGAAAACTTTAATT
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