DR403477

Overview
NameDR403477
Unique NameDR403477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403477_ssr7 microsatellite DR403477_ssr7:7..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DR403477 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.816e-22
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1
Query:   85 MSDTCGNCDCADRSQCV*KGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCSPTCACVNCTCG 282
            MSDTCGNCDCAD++QCV KGSSY AD +ET+ S ++  VVMD  AAE +G CKC P+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of DR403477 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.313e-17
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1
Query:   94 TCGNCDCADRSQCV*KGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCSPTCACVNCTCGS 285
            TCGNCDC D+SQCV KG+SY  D VET+ S+V  V+V   +AAE +G CKC   CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of DR403477 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.634e-17
Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   85 MSDTCGNCDCADRSQCV*KGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCSPTCACVNCTC 279
            MSD CGNCDCAD SQCV KG+S   D VETD S++  VV M V AAE+ G CKC  +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of DR403477 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.994e-15
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   85 MSDTCGNCDCADRSQCV*KGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCSPTCACVNCTC 279
            MS  C NCDC+D SQC  KG S+    VET+   + TV+ MD  AAE  GNCKC P+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of DR403477 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.534e-14
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   85 MSDTCGNCDCADRSQCV*KGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCSPTCACVNCTCG 282
            MS  C NCDCAD +QCV KG+SY    VET+   + TV V D  AAE +G CKC   C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of DR403477 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   85 MSDTCGNCDCADRSQCV*KGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCSPTCACVNCTCG 282
            MSD CGNCDCAD+SQCV KG+SY    VE + S        +V A E  G CKC  +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DR403477 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   85 MSDTCGNCDCADRSQCV*KGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCSPTCACVNCTCG 282
            MSD CGNCDCAD+SQCV KG+SY    VE + S        +V A E  G CKC  +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DR403477 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.935e-13
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   85 MSDTCGNCDCADRSQCV*KGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCSPTCACVNCTCG 282
            MSD CGNCDCAD+SQCV KG+SY    V+ + S     +  +V   E +G CKC+  C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of DR403477 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.875e-12
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   85 MSDTCGNCDCADRSQCV*KGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCSPTCACVNCTCG 282
            MSD CG+CDCAD+SQCV KG+SY    V+ + S     +  +V   E +G CKC+  C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of DR403477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA5.816e-2266.67Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC4.313e-1757.81Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE5.634e-1764.62Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV8.994e-1555.38Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO1.534e-1456.06Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ5.830e-1451.52Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI5.830e-1451.52Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ4.935e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI1.875e-1246.97Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241C22 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241C22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403477 ID=DR403477; Name=DR403477; organism=Citrus sinensis; type=EST; length=589bp
GGGGACAGCAAAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTCTATTTC
CAGTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCG
GCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGTAGAAGGGAAGCAGC
TATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGT
TGTCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCAGCC
CCACCTGCGCTTGTGTGAACTGCACCTGTGGTAGTCACTAATAAGCAAAC
ACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGG
TTAAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTTCG
TTTTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTGTC
ACCCATCACTCGTAATGTTTTGTGTTTCCTTCTAGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAACCCAAAAAAAAAAAAAAAAAAAAAAA
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