DR403471

Overview
NameDR403471
Unique NameDR403471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403471_ssr213 microsatellite DR403471_ssr213:213..224. BLAST: Citrus ESTs to Prunus persica proteins V1
DR403471_ssr393 microsatellite DR403471_ssr393:393..404. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DR403471 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.437e-14
Identity = 41/95 (43.16%), Postives = 60/95 (63.16%), Query Frame = 3
Query:  435 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPD 710
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+AT+    K+ DN P+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPE 95          
BLAST of DR403471 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.437e-14
Identity = 41/95 (43.16%), Postives = 60/95 (63.16%), Query Frame = 3
Query:  435 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPD 710
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+AT+    K+ DN P+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPE 95          
BLAST of DR403471 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.437e-14
Identity = 41/95 (43.16%), Postives = 60/95 (63.16%), Query Frame = 3
Query:  435 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPD 710
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+AT+    K+ DN P+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPE 95          
BLAST of DR403471 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.437e-14
Identity = 41/95 (43.16%), Postives = 60/95 (63.16%), Query Frame = 3
Query:  435 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPD 710
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+AT+    K+ DN P+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPE 95          
BLAST of DR403471 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.164e-13
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 3
Query:  435 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPD 710
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+ T+    K+ DN P+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPE 95          
BLAST of DR403471 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.092e-13
Identity = 36/95 (37.89%), Postives = 60/95 (63.16%), Query Frame = 3
Query:  435 TIWVGDLHHWMDENYLHSCFASTGEIA-SIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP--FRLNWATFSTGDKRSDNGPD 710
            ++W+GDL  +MDEN++   F++ GE A  +K+I ++ TG S GY FVE    A+ ++ +Q     L+P ++ P  F+LN+AT+    KR + GP+
Sbjct:    7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPE 98          

HSP 2 Score: 23.483 bits (49), Expect = 4.092e-13
Identity = 10/21 (47.62%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  712 FLXFVGDLAADVTXXLLHETF 774
            F  FVGDL ++V    LH+ F
Sbjct:   99 FSVFVGDLTSEVDDYQLHQFF 119          
BLAST of DR403471 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.091e-12
Identity = 33/89 (37.08%), Postives = 51/89 (57.30%), Query Frame = 3
Query:  411 GSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSE--GYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT 671
            G G   + T+W+GDL  WMD  ++   +AS  E  ++KV+R+K +       Y FV+F + A AE+ L  Y + ++P     F+LNWAT
Sbjct:   78 GVGSKMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWAT 166          
The following BLAST results are available for this feature:
BLAST of DR403471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TSAP1_RAT7.437e-1443.16tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_MOUSE7.437e-1443.16tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
TSAP1_HUMAN7.437e-1443.16tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN7.437e-1443.16tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
TSAP1_PONAB2.164e-1342.11tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
TSP1L_DANRE4.092e-1337.89tRNA selenocysteine 1-associated protein 1-like OS... [more]
CSX1_SCHPO9.091e-1237.08RNA-binding post-transcriptional regulator csx1 OS... [more]
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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241C13 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241C13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403471 ID=DR403471; Name=DR403471; organism=Citrus sinensis; type=EST; length=779bp
GGGGCTCCCTCTTTGTTGAAATCTCTCAGATTCATCGTTTTCTCTCTCTT
AACAACAACTCAGATTCATTAATTATATTTTGTTACATTTGTTTGTAACC
CTATCCCTGAATCTTTCCATTTTCATTTTATTTTTAATAAAGAAGAGGAA
GATAAATGAATAAGATGCAATCAAGCGGCTCTGATTCATCGCAGGACCAG
CAGAATCAACGGCAACAACAACAACAGCCGCCGCCTCCTCAGCAGCAACC
TTGGATGGCGATGCAGTATCCAGCGGCGGCGATGGTAATGCCTCACCAAA
TGATGCCACCTCAACATTATCCGATACCGCCACCTCCCTATATGCCGTAT
CACCAATACCAGCATCACCACCAGCCGCATCTACAGCACCAACAGCAGCA
GCAGCATCAAGGATCTGGCGGTGGTGAGAATAAGACTATCTGGGTCGGTG
ATTTGCATCATTGGATGGACGAGAACTACCTTCATAGCTGTTTTGCTTCC
ACTGGAGAGATTGCCTCCATTAAGGTTATTCGCAATAAGCAGACAGGATT
GTCAGAAGGTTATGGATTTGTGGAATTTTTTACCCATGCAACAGCTGAGA
AGGTTCTGCAGAGCTATACTAGCATTCTGATGCCCAACACAGATCAGCCT
TTCCGCCTGAACTGGGCAACATTTAGTACGGGTGACAAGCGCTCAGATAA
TGGTCCTGATCTTTCTANTTTTTGTAGGAGATTTAGCTGCCGATGTTACT
GNNNNCTTATTGCATGAAACTTTTGCTAG
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