DR403469

Overview
NameDR403469
Unique NameDR403469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6094 contig Csv1_Contig6094:1..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403469 vs. ExPASy Swiss-Prot
Match: PH1_ARATH (Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.668e-51
Identity = 57/77 (74.03%), Postives = 67/77 (87.01%), Query Frame = 2
Query:  239 SKPRGVIPVASXXTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEIVDYDSKR 469
            S PRGVI V    TVKGAEDV+NK +AFELS+ + TM+FIAD+EKEKE+WINSIGRSIVQHSRSVTDSE++DYD +R
Sbjct:   69 STPRGVISVGDCLTVKGAEDVVNKPFAFELSSGSYTMFFIADNEKEKEEWINSIGRSIVQHSRSVTDSEVLDYDHRR 145          

HSP 2 Score: 103.99 bits (258), Expect = 1.668e-51
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 1
Query:   40 MGSLWRAISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKE 219
            M S+WR  +GQ     DY+  EFWSNPERSGWLTKQG+YIKTWRRRWFVLK+GKL WFK+
Sbjct:    1 MESIWRIATGQDPSREDYEGIEFWSNPERSGWLTKQGDYIKTWRRRWFVLKRGKLLWFKD 60          
BLAST of DR403469 vs. ExPASy Swiss-Prot
Match: Y4775_DICDI (PH domain-containing protein DDB_G0274775 OS=Dictyostelium discoideum GN=DDB_G0274775 PE=4 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.207e-11
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 1
Query:  121 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFK 216
            +R GWLTKQG  I+TWRRRWFVLK  KLF+FK
Sbjct:   17 DREGWLTKQGGSIRTWRRRWFVLKGKKLFYFK 48          

HSP 2 Score: 31.5722 bits (70), Expect = 1.207e-11
Identity = 16/55 (29.09%), Postives = 28/55 (50.91%), Query Frame = 2
Query:  251 GVIPVASXXTVKGAEDV-LNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSI 412
            G+I +     VK  +D    K+Y F + T     Y  A++E + + W+ SI R++
Sbjct:   57 GLIELEQNSFVKEEKDKDKKKKYMFTVGTSKRVFYIFAETETDMKQWMESIKRNL 111          
The following BLAST results are available for this feature:
BLAST of DR403469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PH1_ARATH1.668e-5174.03Pleckstrin homology domain-containing protein 1 OS... [more]
Y4775_DICDI1.207e-1175.00PH domain-containing protein DDB_G0274775 OS=Dicty... [more]
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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241C11 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403469 ID=DR403469; Name=DR403469; organism=Citrus sinensis; type=EST; length=788bp
GGGGGATTCAATTTGAAGCCAGCAAGTGATTTGACACAAATGGGTAGCCT
CTGGCGAGCCATATCGGGCCAAACAAACCAGCTCAGCGACTACGACAGCA
CTGAGTTCTGGTCAAACCCCGAACGGTCCGGCTGGTTGACCAAACAAGGC
GAGTACATAAAAACTTGGCGTCGCCGTTGGTTCGTTTTAAAACAAGGCAA
GCTCTTTTGGTTCAAAGAATCTACTGTCACCCGTCGCCTCCAAGCCACGT
GGCGTTATTCCAGTGGCCTCCTNNNTCACCGTCAAGGGAGCCGAAGATGT
GTTGAATAAACAGTACGCTTTTGAGCTGAGTACGAGGACTGAGACGATGT
ACTTCATCGCTGATTCCGAGAAGGAGAAAGAGGACTGGATCAACTCCATC
GGACGCTCCATAGTGCAGCACTCCAGGTCGGTTACTGATTCCGAGATCGT
TGATTACGATAGCAAGCGGTGATGACGATTGATGATAAACTACAGGTTTG
AATCATTTGTGCCACGTGGCAACGTGTGGTGAATAATTCCTTGTTTGCTT
TGTATATTGTGATGCTTAAATTAGTGTGTATTAGTTTGTTAGGGCTTCCG
CGGTGTATGTTCTGATGCTTACTTTGCCACATGAAAATGCTTATAAATTG
AAATCAATTTTTGGTTTTTGTTATGGAATTCGTGAGAAACTGATGTTGAT
TGATGTAATTGTTGGTAACGTAATCGTCTCGTGAATTTGTATTGATTGCT
TCTTGTTTGAACGTGGACTTGATTNNNGCTGAGATTGT
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