DR403467

Overview
NameDR403467
Unique NameDR403467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403467 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 284.263 bits (726), Expect = 1.464e-98
Identity = 140/178 (78.65%), Postives = 155/178 (87.08%), Query Frame = 3
Query:  228 LRKVSFFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDP 761
            L+K   FLADVSTQLKNKNITTDVKVDTNSN++TTITVDEPAPGLK+IFSF+VPDQ+SGKVELQY HEYAGI+T IG TA+P+            ALGTDLSFDTATGNFTKCNAGLS++ +DLIASL LNDKGDT++ASYYH V P+TNTAVGAELTHSFSSNENTLTIGTQH LDP
Sbjct:   46 LKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDP 223          

HSP 2 Score: 95.5153 bits (236), Expect = 1.464e-98
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 2
Query:   92 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELF 247
            MVKGPGLYS+IGKKARDLLY+DY SDHKFTVTTY++ GVAIT+SG+KKGELF
Sbjct:    1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELF 52          
BLAST of DR403467 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 2.312e-90
Identity = 126/177 (71.19%), Postives = 146/177 (82.49%), Query Frame = 3
Query:  231 RKVSFFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDP 761
            +K   FLADV+TQLKNKN+TTD+KVDTNSNLFTTITVDE APGLK+I SF VPDQRSGK+E+QY H+YAGI T +G TANPI            ALGTD+SFDT TG+FTKCNAGLS+T+ DL+ASL LN+KGD L ASYYH VSPLT+TAVGAE+ HSFS+NEN +T+GTQH LDP
Sbjct:   47 KKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDP 223          

HSP 2 Score: 91.2781 bits (225), Expect = 2.312e-90
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 2
Query:   92 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELF 247
            M KGPGLY+EIGKKARDLLYKDYQSDHKF++TTY+  GV ITSSG KKG+LF
Sbjct:    1 MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLF 52          
BLAST of DR403467 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 4.324e-83
Identity = 113/177 (63.84%), Postives = 136/177 (76.84%), Query Frame = 3
Query:  231 RKVSFFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDP 761
            +K   FL DV+TQLKNKNITTD+KVDTNSNLFTTITV+EPAPG+K+I SF VP+Q SGKVELQY HEYAGIS+ +G  ANPI            A G D+SFDT  G  TK NA +++   DLI SLTLN+KGD L+ASYYH ++PL+NTAVG +++H FS+ ENT T+GTQHALDP
Sbjct:   47 KKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDP 223          

HSP 2 Score: 93.2041 bits (230), Expect = 4.324e-83
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 2
Query:   92 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFFG 253
            MVKGPGLY++IGKKARDLLYKDY SD KFT++TY+  GVAITSSG KKGELF G
Sbjct:    1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLG 54          
BLAST of DR403467 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 1.253e-79
Identity = 114/177 (64.41%), Postives = 134/177 (75.71%), Query Frame = 3
Query:  231 RKVSFFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDP 761
            +K    L DV+ Q + KNITTD+KV T+S    T TVDE APGL+SIFSF VPDQ SGKVELQY HEYAGIST +G T NP             A+GTD+SFDT +GNFTK NAGLS+T  DLIASLT+NDKGD LNASYYHIV+PL NTAVGAE++H  SS ++T+T+GTQH+LDP
Sbjct:   47 KKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDP 223          

HSP 2 Score: 88.1965 bits (217), Expect = 1.253e-79
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 2
Query:   92 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFFG 253
            MVKGPGLY+EIGKKARDLLYKD+ SD KF++TT++ AGVAITS+G KKG+L  G
Sbjct:    1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLG 54          
BLAST of DR403467 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 7.348e-74
Identity = 102/176 (57.95%), Postives = 129/176 (73.30%), Query Frame = 3
Query:  234 KVSFFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDP 761
            K S FL DV+TQ+KN N T DVKV T+S+L TT+T DEPAPGLK I    +PD +SGK E+QY H+YAGIST +GFTA PI            +LGTD++++T +GNF   NAG ++T  DL ASL LNDKG+ LNASYY IVSP  +T VGAE++H+F++ EN +T+GTQHALDP
Sbjct:   48 KGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSP--STVVGAEISHNFTTKENAITVGTQHALDP 221          

HSP 2 Score: 90.1225 bits (222), Expect = 7.348e-74
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = 2
Query:   92 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFFG 253
            MVKGPGLY+EIGKKARDLLY+DYQ D KF+VTTY+S GVAIT++G  KG LF G
Sbjct:    1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLG 54          
BLAST of DR403467 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.884e-63
Identity = 99/178 (55.62%), Postives = 125/178 (70.22%), Query Frame = 3
Query:  231 RKVSFFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDP 761
            RK      ++ TQ+KNK +T DVK ++ S+L TTITVDE   PGLKSI + +VPDQRSGK+E QY HEYAG++  +G  +NP+            ++G D+SFDTAT +FTK NA LS T  DLIASL LN+ GDTL ASYYH+V   + TAVGAEL+HS S NE+TL  G+QH+LDP
Sbjct:   47 RKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDP 224          

HSP 2 Score: 65.855 bits (159), Expect = 3.884e-63
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 2
Query:   92 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFFG 253
            MV   GLY++IGKK RDLLYKDY +  KF +TT +  GVAIT++G +K E  FG
Sbjct:    1 MVVAVGLYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFG 54          
BLAST of DR403467 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 1.812e-57
Identity = 110/177 (62.15%), Postives = 134/177 (75.71%), Query Frame = 3
Query:  231 RKVSFFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDP 761
            +K      ++ +Q+KNKNIT DVK +++SN+ TT+TVDE  PGLKSI SF VPDQRSGK ELQY H+YAG+S  IG TA+P+            A+G D+S DTATGN TK NAGLS+++ DLIASL LN+KGD+L ASYYHIV+  + TAVGAELTHSFSSNEN+LT GTQH LDP
Sbjct:   46 KKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNH-SATAVGAELTHSFSSNENSLTFGTQHTLDP 221          

HSP 2 Score: 88.1965 bits (217), Expect = 5.334e-17
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 2
Query:  101 GPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFFG*CQHSVEEQ 280
            GPGLY EIGKKARDLLY+DYQ+DHKFT+TTYTS GVAIT++  KK +L FG  Q  ++ +
Sbjct:    3 GPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNK 62          
BLAST of DR403467 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.215e-55
Identity = 110/178 (61.80%), Postives = 132/178 (74.16%), Query Frame = 3
Query:  231 RKVSFFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDP 761
            +K    + ++ +Q+KNKNIT DVK ++ SN+ TTIT D+  APGLK+I SF VPDQ+SGKVELQY H+YAGI+  IG TANP+            A+G D+S DTAT NF K NA LSYT+ DLIASL LN+KGD+L ASYYHIV   + TAVGAELTHSFSSNEN+LT GTQH LDP
Sbjct:   46 KKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVEK-SGTAVGAELTHSFSSNENSLTFGTQHTLDP 222          

HSP 2 Score: 79.337 bits (194), Expect = 2.478e-14
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:  101 GPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFFG*CQHSVEEQ 280
            GPGLYS IGKKA+DLLY+DYQ+DHKFT+TTYT+ G AIT++  KK +L  G  Q  ++ +
Sbjct:    3 GPGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNK 62          
The following BLAST results are available for this feature:
BLAST of DR403467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VDAC2_SOLTU1.464e-9878.65Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_SOLTU2.312e-9071.19Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC_PEA4.324e-8363.84Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_ARATH1.253e-7964.41Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC2_ARATH7.348e-7457.95Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC_MAIZE3.884e-6355.62Outer plastidial membrane protein porin OS=Zea may... [more]
VDAC1_ORYSJ1.812e-5762.15Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_WHEAT2.215e-5561.80Mitochondrial outer membrane porin OS=Triticum aes... [more]
back to top
Properties
Property NameValue
Genbank descriptionCSAC-PNP1241C09 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403467 ID=DR403467; Name=DR403467; organism=Citrus sinensis; type=EST; length=761bp
GGGGAGGGTTTTGATTTCATAATCTTCCTCCAGCTGAAATAATCAAAACT
AATATTTCTCAGCGTTTCCTTTCCATTTTCTCTGGAGAATCATGGTGAAA
GGCCCCGGGCTCTACTCTGAAATCGGCAAGAAAGCCCGAGATCTTCTCTA
CAAGGACTACCAGAGCGACCACAAGTTCACTGTCACTACTTACACCTCAG
CTGGAGTCGCGATAACTTCGAGTGGTGTTAAGAAAGGTGAGCTTTTTTTT
GGCTGATGTCAGCACTCAGTTGAAGAACAAGAACATCACTACTGATGTTA
AAGTTGATACTAACTCTAATCTTTTTACAACCATCACTGTCGATGAGCCT
GCTCCTGGACTCAAGTCAATCTTTAGCTTTATCGTTCCTGATCAGAGATC
TGGCAAGGTGGAACTCCAATATCAGCATGAATATGCTGGAATAAGCACTG
GCATTGGATTCACTGCAAATCCCATTGTTAACTTTTCTGGTGTGGTTGGA
AACAATTCTGTTGCTCTTGGGACTGATCTCTCATTTGATACTGCCACTGG
CAACTTCACCAAGTGCAATGCGGGGCTGAGCTATACACATACTGACCTCA
TTGCTTCCCTGACATTGAATGACAAAGGTGACACCCTTAATGCTTCCTAC
TACCACATTGTAAGCCCACTGACCAATACCGCTGTTGGGGCGGAGCTGAC
CCATAGCTTTTCAAGCAACGAGAACACTCTGACAATCGGAACTCAGCATG
CTCTTGATCCT
back to top