DR403463

Overview
NameDR403463
Unique NameDR403463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403463_ssr60 microsatellite DR403463_ssr60:60..77. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig313 contig Csv1_Contig313:237..1028. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403463 vs. ExPASy Swiss-Prot
Match: UBE12_WHEAT (Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum GN=UBA2 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.054e-79
Identity = 151/200 (75.50%), Postives = 168/200 (84.00%), Query Frame = 1
Query:  175 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGRGSTHGYNCIH*Q*QPSASIFVXDDERLEFQDG 774
            +IDEDLHSRQLAVYGRETM+ LF SN+LVSG+QGLGAEIAKNL+LAGVKSVTLHD+G VELWDLSSNF  S+ND+G+NRA A VQKLQELNNAV++S LT  LTKE LS FQAVVFTDISLDKAIEFDD+CH+HQP I+FIK+EVRGLFGSVFCDFGPEFTV+DVDG     G         P A +   DDERLEFQDG
Sbjct:   42 EIDEDLHSRQLAVYGRETMKPLFGSNVLVSGLQGLGAEIAKNLVLAGVKSVTLHDDGNVELWDLSSNFFLSENDVGQNRAQACVQKLQELNNAVLVSALTGDLTKEHLSKFQAVVFTDISLDKAIEFDDYCHSHQPPIAFIKSEVRGLFGSVFCDFGPEFTVLDVDGEEPHTGIVASISNDNP-ALVSCVDDERLEFQDG 240          
BLAST of DR403463 vs. ExPASy Swiss-Prot
Match: UBE11_WHEAT (Ubiquitin-activating enzyme E1 1 OS=Triticum aestivum GN=UBA1 PE=1 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.377e-79
Identity = 151/200 (75.50%), Postives = 168/200 (84.00%), Query Frame = 1
Query:  175 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGRGSTHGYNCIH*Q*QPSASIFVXDDERLEFQDG 774
            +IDEDLHSRQLAVYGRETM+RLF SN+LVSG+QGLGAEIAKNL+LAGVKSVTLHD+G VELWDLSSNF  S+ND+G+NRA A VQKLQELNNAV++S LT  LTKE LS FQAVVFTDISLDKAIEFDD+CH+ QP I+FIK+EVRGLFGSVFCDFGPEFTV+DVDG     G         P A +   DDERLEFQDG
Sbjct:   42 EIDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIAKNLVLAGVKSVTLHDDGNVELWDLSSNFFLSENDVGQNRAQACVQKLQELNNAVLVSALTGDLTKEHLSKFQAVVFTDISLDKAIEFDDYCHSQQPPIAFIKSEVRGLFGSVFCDFGPEFTVLDVDGEEPHTGIVASISNDNP-ALVSCVDDERLEFQDG 240          
BLAST of DR403463 vs. ExPASy Swiss-Prot
Match: UBE13_WHEAT (Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum GN=UBA3 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.686e-75
Identity = 146/200 (73.00%), Postives = 162/200 (81.00%), Query Frame = 1
Query:  175 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGRGSTHGYNCIH*Q*QPSASIFVXDDERLEFQDG 774
            +IDEDLHSRQLAVYGRETMRRLFAS++LVSG+ GLGAEIAKNL LAGVKSVT+HD  TV++WDLS NF  S++DIGKNRA A V KLQELNNAV++S LT +LT E LS FQAVVFTDI LDKA EFDD+CHNHQP ISFIK+EV GLFGSVFCDFGP+FTV+DVDG     G         P A I   DDERLEFQDG
Sbjct:   45 EIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAEIAKNLALAGVKSVTIHDVKTVKMWDLSGNFFLSEDDIGKNRAAACVAKLQELNNAVLISALTEELTTEHLSKFQAVVFTDIDLDKAYEFDDYCHNHQPPISFIKSEVCGLFGSVFCDFGPKFTVLDVDGEDPHTGIIASISNDNP-ALISCVDDERLEFQDG 243          
BLAST of DR403463 vs. ExPASy Swiss-Prot
Match: UBA1_BOVIN (Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.642e-47
Identity = 97/198 (48.99%), Postives = 128/198 (64.65%), Query Frame = 1
Query:   97 KEGEN----HSISASIAEVPIMTLG-NSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDG 675
            K G N    HS+ + +  VP   +  N +  DIDE L+SRQL V G E M+RL  S++LVSG++GLG EIAKN+IL GVK+VTLHD+GT +  DLSS F   + DIGKNRA  S  +L ELN+ V +S  T  L ++ LSDFQ VV T+  L+  +   +FCH+H   I  + A+ RGLFG +FCDFG E  + D +G
Sbjct:   18 KPGSNCSPAHSVLSEVPSVPANGMAKNVSDADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVPVSAYTGPLVEDFLSDFQVVVLTNSPLEDQLRVGEFCHSH--GIKLVVADTRGLFGQLFCDFGEEMILTDSNG 213          

HSP 2 Score: 25.7942 bits (55), Expect = 8.642e-47
Identity = 13/40 (32.50%), Postives = 21/40 (52.50%), Query Frame = 2
Query:  674 GEDPHTGIIASISNDNPALVSLCXMMKGLSFRMGXXVVFS 793
            GE P + +++ ++ DNP +V+ C       F  G  V FS
Sbjct:  213 GEQPLSAMVSMVTKDNPGVVT-CLDEARHGFESGDFVSFS 251          
BLAST of DR403463 vs. ExPASy Swiss-Prot
Match: UBA1_HUMAN (Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens GN=UBA1 PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 2.074e-45
Identity = 98/198 (49.49%), Postives = 130/198 (65.66%), Query Frame = 1
Query:   97 KEGENHSISASI-AEVP-IMTLG---NSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDG 675
            K G N S + S+ +EVP + T G   N ++ DIDE L+SRQL V G E M+RL  S++LVSG++GLG EIAKN+IL GVK+VTLHD+GT +  DLSS F   + DIGKNRA  S  +L ELN+ V ++  T  L ++ LS FQ VV T+  L+  +   +FCHN    I  + A+ RGLFG +FCDFG E  + D +G
Sbjct:   18 KPGSNCSPAQSVLSEVPSVPTNGMAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVPVTAYTGPLVEDFLSGFQVVVLTNTPLEDQLRVGEFCHNR--GIKLVVADTRGLFGQLFCDFGEEMILTDSNG 213          

HSP 2 Score: 25.7942 bits (55), Expect = 2.074e-45
Identity = 13/40 (32.50%), Postives = 21/40 (52.50%), Query Frame = 2
Query:  674 GEDPHTGIIASISNDNPALVSLCXMMKGLSFRMGXXVVFS 793
            GE P + +++ ++ DNP +V+ C       F  G  V FS
Sbjct:  213 GEQPLSAMVSMVTKDNPGVVT-CLDEARHGFESGDFVSFS 251          
BLAST of DR403463 vs. ExPASy Swiss-Prot
Match: UBA1_RAT (Ubiquitin-like modifier-activating enzyme 1 OS=Rattus norvegicus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.930e-44
Identity = 92/198 (46.46%), Postives = 127/198 (64.14%), Query Frame = 1
Query:   97 KEGEN----HSISASIAEVPIMTLG-NSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDG 675
            K G N     S+ + ++ VP   +  N ++ DIDE L+SRQL V G E M+ L  S++LVSG++GLG EIAKN+IL GVK+VTLHD+GT +  DLSS F   + DIGKNRA  S  +L ELN+ V ++  T  L ++ LS FQ VV T+  L++ +   +FCH+    I  + A+ RGLFG +FCDFG E  + D +G
Sbjct:   18 KPGSNCSSAQSVLSEVSSVPTNGMAKNGSEADIDESLYSRQLYVLGHEAMKMLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTTQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVPVTAYTGPLVEDFLSGFQVVVLTNSPLEEQLRVGEFCHSR--GIKLVVADTRGLFGQLFCDFGEEMVLTDSNG 213          

HSP 2 Score: 25.7942 bits (55), Expect = 2.930e-44
Identity = 13/40 (32.50%), Postives = 21/40 (52.50%), Query Frame = 2
Query:  674 GEDPHTGIIASISNDNPALVSLCXMMKGLSFRMGXXVVFS 793
            GE P + +++ ++ DNP +V+ C       F  G  V FS
Sbjct:  213 GEQPLSAMVSMVTKDNPGVVT-CLDEARHGFETGDFVSFS 251          
BLAST of DR403463 vs. ExPASy Swiss-Prot
Match: UBA1_MOUSE (Ubiquitin-like modifier-activating enzyme 1 OS=Mus musculus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.101e-43
Identity = 93/198 (46.97%), Postives = 126/198 (63.64%), Query Frame = 1
Query:   97 KEGENHSISAS----IAEVPIMTLG-NSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDG 675
            K G N S + S    ++ VP   +  N ++ DIDE L+SRQL V G E M+ L  S++LVSG++GLG EIAKN+IL GVK+VTLHD+GT +  DLSS F   + DIGKNRA  S  +L ELN+ V ++  T  L ++ LS FQ VV T+  L+  +   +FCH+    I  + A+ RGLFG +FCDFG E  + D +G
Sbjct:   18 KPGSNCSPAQSALSEVSSVPTNGMAKNGSEADIDESLYSRQLYVLGHEAMKMLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTTQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVPVTAYTGPLVEDFLSSFQVVVLTNSPLEAQLRVGEFCHSR--GIKLVVADTRGLFGQLFCDFGEEMVLTDSNG 213          

HSP 2 Score: 25.7942 bits (55), Expect = 1.101e-43
Identity = 13/40 (32.50%), Postives = 21/40 (52.50%), Query Frame = 2
Query:  674 GEDPHTGIIASISNDNPALVSLCXMMKGLSFRMGXXVVFS 793
            GE P + +++ ++ DNP +V+ C       F  G  V FS
Sbjct:  213 GEQPLSAMVSMVTKDNPGVVT-CLDEARHGFETGDFVSFS 251          
BLAST of DR403463 vs. ExPASy Swiss-Prot
Match: UBA1_RABIT (Ubiquitin-like modifier-activating enzyme 1 OS=Oryctolagus cuniculus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.435e-43
Identity = 94/198 (47.47%), Postives = 126/198 (63.64%), Query Frame = 1
Query:   97 KEGENHSISASIA-EVPIMTLG----NSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDG 675
            K G N S + S+  +VP         N ++ DIDE L+SRQL V G E M+RL  S++LVSG++GLG EIAKN+IL GVK+VTLHD+GT +  DLSS F   + DIGKNRA  S  +L ELN+ V ++  T  L ++ LS FQ VV T+  L+  +   +FCH+    I  + A+ RGLFG +FCDFG E  + D +G
Sbjct:   18 KPGSNCSPAQSVLPQVPSAPTNGMAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVPVTAYTGPLVEDFLSGFQVVVLTNSPLEDQLRVGEFCHSR--GIKLVVADTRGLFGQLFCDFGEEMILTDSNG 213          

HSP 2 Score: 25.0238 bits (53), Expect = 1.435e-43
Identity = 13/40 (32.50%), Postives = 21/40 (52.50%), Query Frame = 2
Query:  674 GEDPHTGIIASISNDNPALVSLCXMMKGLSFRMGXXVVFS 793
            GE P + +++ ++ DNP +V+ C       F  G  V FS
Sbjct:  213 GEQPLSTMVSMVTKDNPGVVT-CLDEARHGFESGDFVSFS 251          
BLAST of DR403463 vs. ExPASy Swiss-Prot
Match: UBA1Y_MOUSE (Ubiquitin-like modifier-activating enzyme 1 Y OS=Mus musculus GN=Ube1ay PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 4.137e-43
Identity = 88/188 (46.81%), Postives = 120/188 (63.83%), Query Frame = 1
Query:  112 HSISASIAEVPIMTLGNSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDG 675
            +S+   +   P   +  + + DIDE L+SRQL V G E M+ L AS++L+SG+QGLG EIAKN+IL GVK+VTLHD+G  +  DLSS F   + DIGKNRA  S  +L ELN+ V +   T  L +E LS FQ VV T+  L+  ++  +FCH+H   I  + A+ RGL G +FCDFG E  + D +G
Sbjct:   27 YSVMFGVPPGPTNEMSKNKEMDIDESLYSRQLYVLGHEAMKHLQASSVLISGLQGLGVEIAKNIILGGVKAVTLHDQGIAQWADLSSQFCLREEDIGKNRAEISQPRLAELNSYVPVFAYTGPLIEEFLSGFQVVVLTNTPLEYQLQVGEFCHSH--GIKLVVADTRGLVGQLFCDFGEEMILTDSNG 212          

HSP 2 Score: 23.8682 bits (50), Expect = 4.137e-43
Identity = 11/40 (27.50%), Postives = 21/40 (52.50%), Query Frame = 2
Query:  674 GEDPHTGIIASISNDNPALVSLCXMMKGLSFRMGXXVVFS 793
            GE P + +++ I+ +NP +V+ C       F  G  + F+
Sbjct:  212 GEQPLSAMVSMITKENPGIVT-CLEDSRHGFESGDFISFT 250          
BLAST of DR403463 vs. ExPASy Swiss-Prot
Match: UBA1_SCHPO (Ubiquitin-activating enzyme E1 1 OS=Schizosaccharomyces pombe GN=ptr3 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.910e-40
Identity = 87/177 (49.15%), Postives = 118/177 (66.67%), Query Frame = 1
Query:  148 MTLGNSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCH-NHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDG 675
            M +  ++Q  IDE L+SRQL V G E M+++  SN+L+ G +GLG EIAKN+ LAGVKSVTL+D     + DLSS +  +++DIG  RA  +V KL ELN  V +S +  +L+ E L +F+ VV T+ SL K +E +DF H NH   I++I A+ RGLFGS+FCDFG  F   D DG
Sbjct:    5 MNIDQTDQNTIDEGLYSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDLSSQYFLTEDDIGVPRAKVTVSKLAELNQYVPVS-VVDELSTEYLKNFKCVVVTETSLTKQLEINDFTHKNH---IAYIAADSRGLFGSIFCDFGENFICTDTDG 177          

HSP 2 Score: 23.0978 bits (48), Expect = 8.910e-40
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  674 GEDPHTGIIASISND 718
            G +P TG+IASI++D
Sbjct:  177 GNEPLTGMIASITDD 191          
The following BLAST results are available for this feature:
BLAST of DR403463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
UBE12_WHEAT1.054e-7975.50Ubiquitin-activating enzyme E1 2 OS=Triticum aesti... [more]
UBE11_WHEAT1.377e-7975.50Ubiquitin-activating enzyme E1 1 OS=Triticum aesti... [more]
UBE13_WHEAT2.686e-7573.00Ubiquitin-activating enzyme E1 3 OS=Triticum aesti... [more]
UBA1_BOVIN8.642e-4748.99Ubiquitin-like modifier-activating enzyme 1 OS=Bos... [more]
UBA1_HUMAN2.074e-4549.49Ubiquitin-like modifier-activating enzyme 1 OS=Hom... [more]
UBA1_RAT2.930e-4446.46Ubiquitin-like modifier-activating enzyme 1 OS=Rat... [more]
UBA1_MOUSE1.101e-4346.97Ubiquitin-like modifier-activating enzyme 1 OS=Mus... [more]
UBA1_RABIT1.435e-4347.47Ubiquitin-like modifier-activating enzyme 1 OS=Ory... [more]
UBA1Y_MOUSE4.137e-4346.81Ubiquitin-like modifier-activating enzyme 1 Y OS=M... [more]
UBA1_SCHPO8.910e-4049.15Ubiquitin-activating enzyme E1 1 OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241C04 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403463 ID=DR403463; Name=DR403463; organism=Citrus sinensis; type=EST; length=793bp
GAGGCATCATCTGCTACCAAGAAGCATCGGATCTCTGCCACGGCTGATAG
TAACAACAACAGCAGCAGCAGCAGCAGCAACAACGTAGTCACTGGAAAGG
AGGGGGAGAATCATAGTATCAGTGCAAGCATAGCTGAAGTGCCGATCATG
ACTTTGGGCAATTCAAATCAGACAGACATAGATGAAGATCTGCACAGCCG
ACAGCTGGCTGTGTATGGTCGCGAGACGATGAGGCGGCTTTTTGCTTCAA
ATATCCTCGTCTCCGGGATGCAGGGTCTTGGTGCCGAAATTGCAAAGAAT
CTGATTCTTGCGGGTGTCAAGTCTGTGACCTTGCACGATGAAGGGACGGT
GGAGTTGTGGGATTTGTCGAGTAATTTTGTATTTTCAGATAATGACATTG
GTAAGAACAGAGCACTTGCTTCTGTTCAGAAGTTGCAGGAGCTCAATAAT
GCAGTTGTCCTTTCTACCTTAACGTCGAAATTGACCAAAGAACAACTTTC
TGATTTTCAGGCTGTTGTCTTCACTGACATTAGTCTTGATAAAGCCATTG
AGTTCGACGACTTTTGCCACAATCATCAACCAGCTATCTCCTTCATCAAA
GCTGAAGTTAGAGGCCTTTTTGGCTCCGTGTTTTGTGACTTTGGTCCTGA
GTTTACTGTTGTTGATGTTGATGGGAGAGGATCCACACACGGGTATAATT
GCATCCATTAGCAATGACAACCCAGCGCTAGTATCTTTGTGTTNGATGAT
GAAAGGCTTGAGTTTCAGGATGGGGGNNNNTGTTGTATTCTCT
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