DR403461

Overview
NameDR403461
Unique NameDR403461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403461 vs. ExPASy Swiss-Prot
Match: LIAS_RAT (Lipoyl synthase, mitochondrial OS=Rattus norvegicus GN=Lias PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.615e-48
Identity = 82/128 (64.06%), Postives = 104/128 (81.25%), Query Frame = 1
Query:  316 VKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 699
            ++ P WL+ K P G+ + ++K +L +L L+TVCEEA+CPNIGECW GG    ATATIML+GDTCTRGCRFC+VKT+RNP P DP EP+NTA+AIA WG+DY+VLTSVDRDD+ DGG+ H A+TV  +K
Sbjct:   73 LRLPPWLKTKIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPPLDPSEPDNTARAIAEWGLDYVVLTSVDRDDVVDGGAEHIAKTVSCLK 200          
BLAST of DR403461 vs. ExPASy Swiss-Prot
Match: LIAS_BOVIN (Lipoyl synthase, mitochondrial OS=Bos taurus GN=LIAS PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.474e-47
Identity = 83/128 (64.84%), Postives = 104/128 (81.25%), Query Frame = 1
Query:  316 VKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 699
            ++ P WL+ + P G+ + ++K +L +L L+TVCEEA+CPNIGECW GG    ATATIML+GDTCTRGCRFC+VKT+RNP P D  EP NTAKAIA WG+DY+VLTSVDRDD+PDGG+ HFA+TV  +K
Sbjct:   74 LRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPPLDANEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHFAKTVSYLK 201          
BLAST of DR403461 vs. ExPASy Swiss-Prot
Match: LIAS_MOUSE (Lipoyl synthase, mitochondrial OS=Mus musculus GN=Lias PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.514e-47
Identity = 82/128 (64.06%), Postives = 103/128 (80.47%), Query Frame = 1
Query:  316 VKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 699
            ++ P WL+ K P G+ + ++K +L +L L+TVCEEA+CPNIGECW GG    ATATIML+GDTCTRGCRFC+VKT+RNP P D  EP+NTAKAIA WG+DY+VLTSVDRDD+ DGG+ H A+TV  +K
Sbjct:   73 LRLPPWLKTKIPMGKNYNKLKNTLRNLSLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPPLDANEPDNTAKAIAEWGLDYVVLTSVDRDDVADGGAEHIAKTVSCLK 200          
BLAST of DR403461 vs. ExPASy Swiss-Prot
Match: LIAS_HUMAN (Lipoyl synthase, mitochondrial OS=Homo sapiens GN=LIAS PE=2 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 5.600e-47
Identity = 82/128 (64.06%), Postives = 103/128 (80.47%), Query Frame = 1
Query:  316 VKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 699
            ++ P WL+ + P G+ + ++K +L +L L+TVCEEA+CPNIGECW GG    ATATIML+GDTCTRGCRFC+VKT+RNP P D  EP NTAKAIA WG+DY+VLTSVDRDD+PDGG+ H A+TV  +K
Sbjct:   74 LRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPPLDASEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHIAKTVSYLK 201          
BLAST of DR403461 vs. ExPASy Swiss-Prot
Match: LIP5_YEAST (Lipoyl synthase, mitochondrial OS=Saccharomyces cerevisiae GN=LIP5 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.525e-44
Identity = 79/127 (62.20%), Postives = 98/127 (77.17%), Query Frame = 1
Query:  319 KKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 699
            K P WL+   P+G  + ++K  +  L L+TVCEEA+CPNIGECW G     ATATIMLLGDTCTRGCRFC+VKT+R P+ PDPMEPENTA+AI  WG+ Y+VLT+VDRDD+ DGG+ H A TV+ +K
Sbjct:  119 KLPRWLKVPIPKGTNYHKLKGDVKELGLSTVCEEARCPNIGECWGGKDKSKATATIMLLGDTCTRGCRFCSVKTNRTPSKPDPMEPENTAEAIKRWGLGYVVLTTVDRDDLVDGGANHLAETVRKIK 245          
BLAST of DR403461 vs. ExPASy Swiss-Prot
Match: LIPA_SCHPO (Lipoyl synthase, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC8D2.15 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.407e-43
Identity = 78/125 (62.40%), Postives = 92/125 (73.60%), Query Frame = 1
Query:  325 PEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 699
            P WL+ K P G  F  +K  L    L+TVCEEA+CPNIGECW G     ATATIML+GDTCTRGCRFC+VKTSR P P DP EPENTA+AI  W + YIVLTSVDRDD+ D G+ H A+T++ +K
Sbjct:   71 PSWLKTKVPLGTNFNRIKHDLRGSHLHTVCEEAKCPNIGECWGGKDKSRATATIMLMGDTCTRGCRFCSVKTSRRPGPLDPNEPENTAEAIKQWNLGYIVLTSVDRDDLTDLGANHIAKTIQKIK 195          
BLAST of DR403461 vs. ExPASy Swiss-Prot
Match: LIPA_ANADF (Lipoyl synthase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=lipA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.252e-42
Identity = 75/127 (59.06%), Postives = 96/127 (75.59%), Query Frame = 1
Query:  319 KKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 699
            +KP WLR   P G R+Q+V++++  L L+TVCEEA CPN+ ECW GG     TAT+ML+GD CTRGCRFC VKT  +P P DP EP + A+AIA  G+DYIV+TSVDRDD+PDGG+GHFA  ++ +K
Sbjct:    4 RKPGWLRVNVPGGARYQQVRDTVKGLALHTVCEEAHCPNVAECWGGG-----TATVMLMGDVCTRGCRFCNVKTDAHPPPLDPDEPRHLAEAIAELGLDYIVVTSVDRDDLPDGGAGHFADAIRRLK 125          
BLAST of DR403461 vs. ExPASy Swiss-Prot
Match: LIPA_ANADE (Lipoyl synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=lipA PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 9.252e-42
Identity = 76/129 (58.91%), Postives = 96/129 (74.42%), Query Frame = 1
Query:  313 DVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 699
            D KKP WLR   P G+R+Q+V+E+L  L+L+TVC EA CPN+ ECW GG     TAT+ML+GD CTRGCRFC VKT+ +P   DP EP + A AIA  G+DYIV+TSVDRDD+PDGG+ HFA  ++ +K
Sbjct:    2 DAKKPSWLRVNVPGGERYQKVRETLKGLQLHTVCAEAHCPNVAECWGGG-----TATVMLMGDVCTRGCRFCNVKTAAHPPALDPDEPRHLAAAIAELGLDYIVVTSVDRDDLPDGGAAHFADAIRRLK 125          
BLAST of DR403461 vs. ExPASy Swiss-Prot
Match: LIPA_NATPD (Probable lipoyl synthase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=lipA PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.023e-40
Identity = 77/127 (60.63%), Postives = 95/127 (74.80%), Query Frame = 1
Query:  319 KKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 699
            +KPEWLR + P G+RF E+KE+L    LNTVCEEA CPN+G+CW+ G DG  TAT MLLGD C+RGC FC V T     P DP EP N A+A+A  G+DY+VLTSVDRDD+ DGG+GHFA T++ +K
Sbjct:    6 RKPEWLRTRPPSGRRFTEIKETLRDRDLNTVCEEANCPNLGDCWS-GRDGPGTATFMLLGDRCSRGCNFCDVATG-GMDPLDPDEPANVAEAVAEIGLDYVVLTSVDRDDLDDGGAGHFAETIREIK 130          
BLAST of DR403461 vs. ExPASy Swiss-Prot
Match: LIPA_HALSA (Probable lipoyl synthase OS=Halobacterium salinarium GN=lipA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.131e-39
Identity = 74/127 (58.27%), Postives = 96/127 (75.59%), Query Frame = 1
Query:  319 KKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDIPDGGSGHFARTVKAMK 699
            +KPEWL+ + P G+RF ++KE+L    L+TVCEEA CPN+GECW+ G DG  TAT ML+GD C+RGC FC VKT     P DP EP N A+++A  G+DY+VLTSVDRDD+ D G+GHFART++ +K
Sbjct:    5 RKPEWLKMRPPSGERFTDIKETLRDNDLHTVCEEASCPNMGECWS-GRDGPGTATFMLMGDRCSRGCNFCDVKTG-GMEPLDPDEPANVAESVAEIGLDYVVLTSVDRDDLDDQGAGHFARTIREIK 129          
The following BLAST results are available for this feature:
BLAST of DR403461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIAS_RAT6.615e-4864.06Lipoyl synthase, mitochondrial OS=Rattus norvegicu... [more]
LIAS_BOVIN1.474e-4764.84Lipoyl synthase, mitochondrial OS=Bos taurus GN=LI... [more]
LIAS_MOUSE2.514e-4764.06Lipoyl synthase, mitochondrial OS=Mus musculus GN=... [more]
LIAS_HUMAN5.600e-4764.06Lipoyl synthase, mitochondrial OS=Homo sapiens GN=... [more]
LIP5_YEAST1.525e-4462.20Lipoyl synthase, mitochondrial OS=Saccharomyces ce... [more]
LIPA_SCHPO6.407e-4362.40Lipoyl synthase, mitochondrial OS=Schizosaccharomy... [more]
LIPA_ANADF9.252e-4259.06Lipoyl synthase OS=Anaeromyxobacter sp. (strain Fw... [more]
LIPA_ANADE9.252e-4258.91Lipoyl synthase OS=Anaeromyxobacter dehalogenans (... [more]
LIPA_NATPD1.023e-4060.63Probable lipoyl synthase OS=Natronomonas pharaonis... [more]
LIPA_HALSA1.131e-3958.27Probable lipoyl synthase OS=Halobacterium salinari... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241B22 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241B22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403461 ID=DR403461; Name=DR403461; organism=Citrus sinensis; type=EST; length=701bp
GGGGAAACAGCTATCGACTGAATTGAATTCCAGGCGGAGAAATCGAAGCC
CACGACGCTGAACTAACGCTTACAAAAAAGGGGGAAAATTGAGAAACCAA
ACTTTATTATAAACGAGCTTGAAAATTTTAGCATTTTGTTTCCACAGCCA
GAAAACGAAAACAGCAGAATGATTCATCAAGCGATTTGGAAACCTTCAAA
TTCAATTTCATATTCAATCCCGTCGAAAATCCGGTGCGAGTCAAGAACTG
ACACGGTGAAGATGAAGCCACCACAAAGACAACAAATGGGTCTGCACACG
GGGAGAGATCCGGATGTGAAGAAGCCGGAGTGGCTGAGACAGAAAGCTCC
ACAAGGTCAGAGGTTTCAAGAAGTTAAAGAATCTCTTTCCTCATTGAAAC
TCAACACTGTTTGCGAGGAGGCCCAGTGCCCCAATATTGGAGAGTGTTGG
AATGGAGGTGGGGACGGCATTGCAACTGCAACGATCATGCTTCTTGGAGA
CACCTGCACCCGCGGCTGCAGGTTTTGTGCTGTGAAAACCAGCAGAAACC
CTGCACCACCTGACCCGATGGAACCTGAAAACACTGCTAAGGCCATTGCT
AGTTGGGGGGTGGATTATATTGTTCTAACGAGTGTAGATCGTGATGATAT
TCCTGATGGTGGTAGTGGTCATTTTGCACGGACAGTCAAAGCTATGAAAA
A
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