CX053425

Overview
NameCX053425
Unique NameCX053425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053425 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.167e-49
Identity = 114/246 (46.34%), Postives = 159/246 (64.63%), Query Frame = 3
Query:   33 MGLGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIPAGVN----NQDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKXXXXXXXXXXXXCSVKKVRARKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQMAWEXXXXXXAAMVSKF---EEHGQVLDQFPFSGEAQPSSVLELAIPHYQPFRLQPTQPNLQD 749
            MG GKIE+ RIE+ T+RQVTFSKRR GL+KK  ELSVLCDA+IGLI+FS  GKLTE+C+   S+++II RY  AKG+ +P   N    + D++ +  EL RM++ET NL+L+L+RY GD DL++V+             S+ KVRARK+E+L +Q +NL R E MLE+EN++++  L  N  Q   E        ++++    E+   ++++FPF GE      L L   H   +RLQPTQPNLQD
Sbjct:    1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAKGI-LPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGD-DLSTVRFEELTELEKLLDQSLNKVRARKLELLHEQMENLKRTEFMLEKENQEMYHWLMSNQIQRQAEVEHHHQQQVMTELKLVEQQQPLMNEFPFFGEDLHLGTLPLLDTH--SYRLQPTQPNLQD 242          
BLAST of CX053425 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.060e-46
Identity = 116/270 (42.96%), Postives = 157/270 (58.15%), Query Frame = 3
Query:   30 IMGLGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIPAGVNNQDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKXXXXXXXXXXXXCSVKKVRARKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQMAWEXXXXXXAAMVSKFEEHGQ------------VLDQFPFSG-EAQPS-------SVLELAIP---HYQPFRLQPTQPNLQDFGLHFPT 770
            IMG GKIE+ RIE++T+RQVTFSKRR GLLKK  ELSVLCDA+IGLIIFS  GKL E+CS+  S+ +II RY    G  +P   N      +Y+E+ +MR++T NL+LSL+RY GD DL+  +             ++ K+RARK+E+++QQ +NL + EKMLE+EN  ++  L   NNQM  +              EH Q            +L  F F G + QPS       + + L  P      P+RLQP+ PNLQD  +H P+
Sbjct:    3 IMGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTTGASLPVEDNRVQ---LYDEVAKMRRDTLNLQLSLQRYKGD-DLSLAQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMYQWLM--NNQMYKQESAAMDHEDHHHHHEHQQAITELNLLGEQPLLSHFTFFGDQEQPSTSTVNHFASISLTSPPANSISPYRLQPSHPNLQDSHVHGPS 266          
BLAST of CX053425 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.885e-45
Identity = 110/248 (44.35%), Postives = 147/248 (59.27%), Query Frame = 3
Query:   33 MGLGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIPAGVNNQDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKXXXXXXXXXXXXCSVKKVRARKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQMAWEXXXXXXAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELAIPHY-------QPFRLQPTQPNLQDFG 755
            MG GKIEI RIE+ TNRQVTFSKRRGGLLKKA EL+VLCDA +G++IFS TGK+ E+CS + S+ E+I  YQ          +N+   + I+ E+ RMR E   L+  +RR+TGD DL+++              SV KVRARK ++L QQ DNL RKE +LE++N  +  ++ +N++Q A         AMV        +     + GE   S+ L+L  P +         FRLQPTQPNLQD G
Sbjct:    1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQTVTNTHFEE-INH--DQQIFVEMTRMRNEMEKLDGGIRRFTGD-DLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSFLCRMINENHHQAA--VGGGDVKAMVEMAPVLSMLTAAPAYYGEESSSTALQLTPPLHAVDAAAAAGFRLQPTQPNLQDPG 242          
BLAST of CX053425 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.250e-43
Identity = 110/253 (43.48%), Postives = 155/253 (61.26%), Query Frame = 3
Query:   33 MGLGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIPAGVNNQDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKXXXXXXXXXXXXCSVKKVRARKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQMAWEXXXXXXAAMVSKFEEHGQVLD-----------QFPFSGEAQPSSVLELA-IPHY--QPFRLQPTQPNLQD 749
            MG GKIEI +IE++T RQVTFSKRR GL+KK RELS+LCDA IGLI+FS TGKL+EFCSE   + ++I RY    G+R+P   ++ D E +++E+  +R+ET NLEL LR + G  DL S+              SV KVR RK E+++QQ +NL RK +MLEE+N  ++  L ++   M ++      A + +K  E+ Q ++           QF    + QP+SVL+LA +P      + LQ  QPNLQ+
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTNGLRLPD--HHDDQEQLHHEMELLRRETCNLELRLRPFHGH-DLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNMYRWLHEHRAAMEFQ-----QAGIDTKPGEYQQFIEQLQCYKPGEYQQFLEQQQQQPNSVLQLATLPSEIDPTYNLQLAQPNLQN 245          
BLAST of CX053425 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.636e-43
Identity = 108/248 (43.55%), Postives = 142/248 (57.26%), Query Frame = 3
Query:   33 MGLGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIPAGVNNQDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKXXXXXXXXXXXXCSVKKVRARKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNN-QMAWEXXXXXXAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELAIPHYQP--------FRLQPTQPNLQD 749
            MG GKIEI RIE+ TNRQVTFSKRRGGLLKKA EL+VLCDA +G++IFS TGK+ E+CS + S+ E+I +YQ A        +N+   + I  E+ RM+ E   LE  +RRYTGD DL+S+              SV KVRARK ++L QQ DNL RKE++LE++N  ++ ++ +N    +  E      A +               + G    SS   L +    P        FRLQPTQPNLQD
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHATNSHFEE-INH--DQQILLEMTRMKNEMEKLETGIRRYTGD-DLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTFLYRMINENQQAALTGEVKLGEMAPLAMLQPPPAFAHSATAYYGGESSSSGTALQLMSAAPQLHADDLGFRLQPTQPNLQD 244          
BLAST of CX053425 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.382e-42
Identity = 109/240 (45.42%), Postives = 147/240 (61.25%), Query Frame = 3
Query:   33 MGLGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIPAGVNNQDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKXXXXXXXXXXXXCSVKKVRARKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQMAWEXXXXXXAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELAIPHYQP-FRLQPTQPNLQD 749
            MG GKIEI RIE+ TNRQVTFSKRRGGLLKKA ELSVLCDAE+GLIIFS +GKL E+ S S+S+++II RYQ   G RI       D++ +Y E+ RM+ E   L+ ++RR  G+ DL S+              +  +VR+RK +++ QQ +NL RKE++LE++N  +  LL +   Q A E        +     E G V    P +  A  ++   L + H+ P FRLQPTQPNLQ+
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKVSGARI----TEYDNQHLYCEMTRMKNENEKLQTNIRRMMGE-DLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAE--QQAAVE-------GVQEPLLEFG-VFCPPPDNKTAAAANAGPLHLGHHLPAFRLQPTQPNLQE 225          
BLAST of CX053425 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.636e-35
Identity = 91/221 (41.18%), Postives = 130/221 (58.82%), Query Frame = 3
Query:  108 GGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIPAGVNNQDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKXXXXXXXXXXXXCSVKKVRARKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQMAWEXXXXXXAAMVSKFEEHGQVLDQFPF----SGEAQPSSVLELAIPHYQPFRLQPTQPNLQDFGL 758
            GGLLKKAREL++LCDA++G+IIFS +GK+ EF S   S+ EII RYQ   G   P      D++ +Y E+ RM+ E   L+ ++R + G+ DL S+              SV KVR+RK ++L+QQ DNL RKE MLEE+N +++ +++D++            AA + +      +LD F        +A  SS+L+L+ P   PFRLQP QPNLQD  L
Sbjct:    1 GGLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQKLSGNCAPV----YDNQQVYCEITRMKNEIDKLQATMRHFAGE-DLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEEQNRELYRVIQDHH------------AASMEQKMVDPSMLDHFGVFYQDDHQAARSSMLQLS-PQLHPFRLQPAQPNLQDANL 203          
BLAST of CX053425 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.027e-29
Identity = 75/168 (44.64%), Postives = 103/168 (61.31%), Query Frame = 3
Query:   33 MGLGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQ-AAKGVRIPAGVNNQDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVK-XXXXXXXXXXXXCSVKKVRARKMEILRQQTDNLLRKEKMLEEEN 530
            MG GKIE+ RIE  T RQVTFSKRR G LKKA EL+VLCDA++G+++FS  GKL +FCS    + E+  RY+   +  R+     N+D E +  E+ R+R E   LE SLRR TG+ DL+SV               S+ KV ARK E++ QQ +++ R  + + E+N
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTRLQE--TNRDDEQMVMEITRLRNEIDQLEASLRRQTGE-DLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQN 165          
BLAST of CX053425 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.989e-29
Identity = 82/239 (34.31%), Postives = 125/239 (52.30%), Query Frame = 3
Query:   33 MGLGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIPAGVNNQDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKXXXXXXXXXXXXCSVKKVRARKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQMAWEXXXXXXAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELAIPHYQPFRLQPTQPNLQD 749
            MG GKIEI RIE+ TNRQVTFSKRR G+LKKARE+SVLCDAE+G++IFS  GKL ++CS  TS+  I+ +YQ   G  +     ++  +++  E+ R++KE  N+++ LR   G+ DLNS++              +  V  + M+      +  +R +KMLE+EN+ +   L   +  ++              +        Q P +                  FR+QP+ PNLQ+
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQTNSGKIL----WDEKHKSLSAEIDRIKKENDNMQIELRHLKGE-DLNSLQPKELIMIEEALDNGIVNVNDKLMD----HWERHVRTDKMLEDENKLLAFKLHQQDIALSGSMRDLELG-----YHPDRDFAAQMPIT------------------FRVQPSHPNLQE 207          
BLAST of CX053425 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.903e-29
Identity = 82/239 (34.31%), Postives = 128/239 (53.56%), Query Frame = 3
Query:   33 MGLGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIPAGVNNQDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKXXXXXXXXXXXXCSVKKVRARKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQMAWEXXXXXXAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELAIPHYQPFRLQPTQPNLQD 749
            MG GKIEI RIE+ +NRQVT+SKRR G++KKA+E++VLCDA++ LIIF  +GK+ E+CS ST++ +++  YQ   G R+     +   E + NE+ R++KE  N+++ LR   G+ D+NS+               +  + A++ EILR    N    +++LEEE++Q+   L  +  +MA           V    +      Q PF+                   R+QP QPNL +
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTSGRRL----WDAKHENLSNEIDRIKKENDNMQVKLRHLKGE-DINSLNHKELMVLEEGLTNGLSSISAKQSEILRMVRKN----DQILEEEHKQLQYAL--HQKEMAAMGGNMRMIEEVYHQRDRDYEYQQMPFA------------------LRVQPMQPNLHE 210          
The following BLAST results are available for this feature:
BLAST of CX053425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
DEF21_ANTMA1.167e-4946.34MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
FBP24_PETHY2.060e-4642.96MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
MAD29_ORYSJ3.885e-4544.35MADS-box transcription factor 29 OS=Oryza sativa s... [more]
TT16_ARATH1.250e-4343.48Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
M17_MAIZE3.636e-4343.55MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
GGM13_GNEGN1.382e-4245.42MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
AP32_ASAEU1.636e-3541.18MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
MAD30_ORYSJ1.027e-2944.64MADS-box transcription factor 30 OS=Oryza sativa s... [more]
MADS2_ORYSJ2.989e-2934.31MADS-box transcription factor 2 OS=Oryza sativa su... [more]
MADS2_PETHY3.903e-2934.31Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_6A01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-6A01-B1-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053425 ID=CX053425; Name=CX053425; organism=Citrus sinensis; type=EST; length=807bp
GCAGTTTATAGAATTAATTGTTGGTATAAATAATGGGACTGGGAAAGATA
GAGATTGCGAGGATCGAGAGCAGAACAAACAGGCAAGTGACTTTTTCGAA
ACGCCGAGGAGGGCTTTTGAAGAAGGCTCGTGAGCTCTCTGTGCTGTGTG
ATGCTGAAATAGGCCTCATCATCTTCTCATGCACTGGAAAACTGACCGAA
TTCTGCAGTGAATCAACCAGCATTGAAGAAATCATAAGAAGGTACCAGGC
TGCTAAAGGGGTGAGAATTCCAGCCGGCGTTAACAATCAGGATTCGGAAG
CAATTTACAATGAGTTAGGAAGAATGAGGAAAGAAACTCACAATCTTGAA
TTGAGTCTCCGACGCTACACGGGTGATATTGACTTGAACTCTGTGAAACT
TGAGGAGTTGACTCAACTTGAACATCAACTGGAGTGTTCAGTCAAGAAGG
TTCGAGCTAGGAAGATGGAGATCTTACGGCAGCAGACAGACAATCTTCTT
AGGAAGGAGAAAATGTTGGAGGAGGAGAATGAGCAAATATTCAGCCTGCT
TAAGGATAATAACAATCAGATGGCATGGGAGCAGCAGCAGCAGCAGCAGG
CAGCAATGGTATCAAAGTTTGAAGAACATGGACAAGTGCTGGATCAGTTT
CCATTTTCTGGAGAGGCACAACCCAGCAGTGTTCTTGAGCTTGCAATTCC
TCATTATCAGCCCTTCCGACTGCAGCCTACTCAGCCTAATCTTCAAGATT
TCGGTCTTCATTTCCCCACCCTTTGGGTGATTAGGTCTGTGGAAAGTGCT
TCTGGGA
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