DR403459

Overview
NameDR403459
Unique NameDR403459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403459 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.378e-60
Identity = 109/157 (69.43%), Postives = 133/157 (84.71%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIGI 690
            + KSKV+RLFGRE+P+H VLG GKPADIF+W+NKK+S GVLGGATA WV+FEL+EYHL+TL+CH+ I+ LAVLFLWSNA+ FINKSPP+IP V +PE+ +L+ AS LR EINR  + LREIASGRDLKKFL  IAGLW+LSI+G   NF+TL YI +
Sbjct:   65 SMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIAL 221          
BLAST of DR403459 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 7.573e-59
Identity = 104/157 (66.24%), Postives = 133/157 (84.71%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIGI 690
            + KSKV+RLFGRE+P+H VLG GKPADIF+W++KK+S GV GGAT  WVLFEL+EYHL+TL+CH+ I++LAVLFLWSNA+ FI+KSPP+IP V +PE+ +L+ AS LR EINR ++ LREIASGRD+KKFL  IAGLW+LSI+G   +F+TL YI +
Sbjct:   61 SLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIAL 217          

HSP 2 Score: 23.483 bits (49), Expect = 7.573e-59
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  711 P*FYEKYEDKI 743
            P FY+KYEDK+
Sbjct:  224 PLFYDKYEDKV 234          
BLAST of DR403459 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.722e-58
Identity = 109/155 (70.32%), Postives = 129/155 (83.23%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYI 684
            + K+K++RLFGRE+P+H + G GKPADIFLWRNKK+S GVLG AT  W+LFELLEY+L+TL  HISIL+LAVLFLWS+ASTFI+KSP  IP V +PE  VL+ AS LR EINR   VLR+IASGRDLKKFL VIAGLW+LS VG+ CNF+TL YI
Sbjct:   40 SLKTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYI 194          

HSP 2 Score: 22.3274 bits (46), Expect = 3.722e-58
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  711 P*FYEKYEDKI 743
            P  YEKYEDK+
Sbjct:  203 PVLYEKYEDKV 213          
BLAST of DR403459 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 6.326e-58
Identity = 104/154 (67.53%), Postives = 125/154 (81.17%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFY 681
            +FKSK++RLFGREKP+H VLG GKPADIFLWRNKK+S GVLG  TA WVLFEL EYHL+  +CH +I +LA LFLWSNA TFI+KS P IP V +PE  +L+  S LR EINR L +LR IASG+D+KKF+ VIAGLW+LSI+G+  NF+TLFY
Sbjct:   44 SFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFY 197          

HSP 2 Score: 22.3274 bits (46), Expect = 6.326e-58
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  711 P*FYEKYEDKI 743
            P  YEKYEDK+
Sbjct:  207 PVLYEKYEDKV 217          
BLAST of DR403459 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.281e-57
Identity = 111/202 (54.95%), Postives = 144/202 (71.29%), Query Frame = 1
Query:   94 MAEHAPEHESADKSLVEKITXXXXXXXXXXXXXXXXXXXXXX-AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIGICF 696
            MAE   +    ++SL+EKI+                       A K+K++R+FGREKP+H VLG GKPAD+FLWR+KK+S  VLG ATA+WVLFEL+EYHL++L+CHISIL+L  LFLWSNA T INK+ P+IP + +PE+  L  AS+LR E+N+A  +LR IA GRDLKKFL V+ GLW++S+VGNW NF+TL Y  ICF
Sbjct:    1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSAVKAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVY--ICF 200          
BLAST of DR403459 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 8.114e-55
Identity = 101/159 (63.52%), Postives = 127/159 (79.87%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIGICF 696
            A K+K++RLFGREKP+H VLG G PAD+FLWR+KK+SA VLG ATA+WVLFEL+EYH ++LVCHI I +LA LFL SNA  F+NK+PP+IP + + E+  L   SALR E+N+A  +LR IA GRDLKKFL V+ GLW++S+VGNW NF+TL Y  ICF
Sbjct:   44 ALKAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVY--ICF 200          
BLAST of DR403459 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.536e-42
Identity = 79/153 (51.63%), Postives = 110/153 (71.90%), Query Frame = 1
Query:  229 SKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIG 687
            S+  RLF R+KPIHHVLG GK AD+ LWRNKKISA VL GATA+WVLFE + +H ++LVC+  +L +   F+WSNAS F+N+S   +P + LP+ F  E   A+  E+NR L  L+++A   +LK+FL  + GLW+ ++VG+ CNF+T+ YIG
Sbjct:   40 SRFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIG 192          
BLAST of DR403459 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.065e-38
Identity = 77/154 (50.00%), Postives = 109/154 (70.78%), Query Frame = 1
Query:  235 VFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIGICF 696
            ++R+FGRE+PIH VLG GKPAD+ LWR+KK++ G+L   T +W+LF      L+T +C  SIL L + FLWSNA   +NKSP  +  + +PEK +L+ ASA+ +E+N A A LR IA  RD+K F+  + GLWL+S++GNW +F++L Y  ICF
Sbjct:   51 IYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLY--ICF 199          
BLAST of DR403459 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.034e-30
Identity = 63/152 (41.45%), Postives = 91/152 (59.87%), Query Frame = 1
Query:  232 KVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIG 687
            K  +LF R++ IH + G GK ADI LWR  KI+A ++ G + +W L E++EY+ ITL+CH S+ S+   F+WS AS F+N   P IP V L E    + A +     N+ L  L ++A GRD   F      L+++SI+G + NFV L +IG
Sbjct:   19 KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIG 170          
BLAST of DR403459 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.350e-25
Identity = 54/145 (37.24%), Postives = 86/145 (59.31%), Query Frame = 1
Query:  256 EKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIGI 690
            E+ +H  +  G  AD+ +W+N++    +LG  T +W LFE   Y     V +  +LS+ +LFLW+ ++   N+  P++P + + E+FV   A A+R  IN  LAV REI  GR+ K+   V   LW +S VGN+ NF+T+ Y+G+
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGV 146          
The following BLAST results are available for this feature:
BLAST of DR403459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLA_ARATH8.378e-6069.43Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH7.573e-5966.24Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH3.722e-5870.32Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH6.326e-5867.53Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH2.281e-5754.95Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH8.114e-5563.52Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH3.536e-4251.63Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH1.065e-3850.00Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH9.034e-3041.45Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLJ_ARATH1.350e-2537.24Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241B20 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241B20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403459 ID=DR403459; Name=DR403459; organism=Citrus sinensis; type=EST; length=744bp
GGGGGTTCCCACCGAGTCTCGCTCTCTCTCGTTCTAGAGTCTAGTACATT
TTTCAATTCATTTTCATCGGCGCTTACTCGGCGGCAGAGATCTATGGCGG
AACATGCACCTGAGCACGAATCAGCCGACAAATCACTGGTGGAGAAGATC
ACGGATAAGATCCATGGCCACGACTCCTCGTCATCTGACTCCGATGACGA
CAAGCCGTCGTCTATTGACGCCTTCAAGTCCAAAGTATTCAGGCTCTTCG
GAAGAGAAAAACCTATTCACCATGTCCTCGGAGCTGGAAAACCTGCTGAT
ATTTTCCTATGGAGGAACAAGAAAATCTCTGCTGGTGTGCTAGGTGGAGC
CACTGCAATGTGGGTTCTCTTTGAGTTGCTGGAATACCATTTAATCACTT
TGGTCTGCCATATATCGATTCTCTCTCTGGCTGTTCTCTTCCTGTGGTCC
AATGCATCCACATTTATCAACAAATCACCGCCAGAGATTCCAGTTGTTAC
ACTTCCTGAGAAGTTTGTCCTTGAATTCGCCTCTGCCTTGAGGTATGAAA
TCAACCGAGCCTTGGCTGTCCTGCGGGAAATTGCGTCTGGAAGGGACTTG
AAGAAGTTTCTTGGTGTCATTGCTGGCTTGTGGCTTTTGTCTATTGTCGG
TAATTGGTGCAACTTCGTGACATTATTCTACATTGGTATTTGTTTTGCTA
CACACCGTGCCCGTGATTTTATGAGAAGTACGAGGACAAGATTG
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