CX053406

Overview
NameCX053406
Unique NameCX053406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053406 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.456e-93
Identity = 172/228 (75.44%), Postives = 186/228 (81.58%), Query Frame = 3
Query:   48 MAEVEAKAPVPESVLKKQKRNEEWALAXXXXXXXXXXXXXXXXXXIYNRAKQYAKEYAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGD 731
            M E E+K  VPESVLKK+KR EEWALA                  I+NRAKQY+KEY E+E+ LIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRG+GKL+ QR ALTDNSI+++ LGK GIIC+EDLIHEIMTVGPHFKEANNFLWPF            RNHYVEGGD
Sbjct:    1 MTEAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGD 228          
BLAST of CX053406 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 9.439e-93
Identity = 172/225 (76.44%), Postives = 184/225 (81.78%), Query Frame = 3
Query:   57 VEAKAPVPESVLKKQKRNEEWALAXXXXXXXXXXXXXXXXXXIYNRAKQYAKEYAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGD 731
            VE+K  VPESVLKK+KR EEWAL                   I+ RA+QY+KEYAE+EK LI LKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML RVEPYVTYG+PNLKSV+ELIYKRGYGKL+ QRIALTDNSI+E+ALGK GIIC EDLIHEI+TVGPHFKEANNFLWPF            RNHYVEGGD
Sbjct:    2 VESKVVVPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGD 226          
BLAST of CX053406 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 3.587e-92
Identity = 171/224 (76.34%), Postives = 184/224 (82.14%), Query Frame = 3
Query:   60 EAKAPVPESVLKKQKRNEEWALAXXXXXXXXXXXXXXXXXXIYNRAKQYAKEYAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGD 731
            E+K  VPESVLKK KR EEWALA                  I+ RA+QYAKEYAE++  LI+LKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRGYGKL+ QRIALTDNSI+++ALGK GIIC+EDLIHEIMTVGPHFKEANNFLWPF            RNHYVEGGD
Sbjct:    3 ESKVVVPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGD 226          
BLAST of CX053406 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.678e-65
Identity = 125/228 (54.82%), Postives = 156/228 (68.42%), Query Frame = 3
Query:   51 AEVEAKAP-VPESVLKKQKRNEEWALAXXXXXXXXXXXXXXXXXXIYNRAKQYAKEYAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGD 731
            AE + K P VPE++ KK++   E  +                   IY +AK Y KEY +  +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLIHEI TVG  FKEANNFLWPF              H+VEGGD
Sbjct:    4 AEEKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEICTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGD 231          
BLAST of CX053406 vs. ExPASy Swiss-Prot
Match: RL7_MOUSE (60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 2.191e-65
Identity = 125/226 (55.31%), Postives = 155/226 (68.58%), Query Frame = 3
Query:   57 VEAKAP-VPESVLKKQKRNEEWALAXXXXXXXXXXXXXXXXXXIYNRAKQYAKEYAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGD 731
            ++ K P VPE++ KK++   E  +                   IY +AK Y KEY +  +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDNS+I ++LGKFGIICMEDLIHEI TVG  FKEANNFLWPF              H+VEGGD
Sbjct:   29 LKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGD 254          
BLAST of CX053406 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.191e-65
Identity = 125/227 (55.07%), Postives = 155/227 (68.28%), Query Frame = 3
Query:   54 EVEAKAP-VPESVLKKQKRNEEWALAXXXXXXXXXXXXXXXXXXIYNRAKQYAKEYAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGD 731
            E + K P VPE++ KK+K   E  +                   IY +AK Y KEY +  +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLIHEI TVG  FKEANNFLWPF              H+VEGGD
Sbjct:    6 EKKKKVPAVPETLKKKRKNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGD 232          
BLAST of CX053406 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 3.738e-65
Identity = 122/219 (55.71%), Postives = 151/219 (68.95%), Query Frame = 3
Query:   75 VPESVLKKQKRNEEWALAXXXXXXXXXXXXXXXXXXIYNRAKQYAKEYAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGD 731
            VPE++ KK++   E  +                   IY +AK Y KEY +  +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDNS++ ++LGKFGIICMEDLIHEI TVG  FKEANNFLWPF              H+VEGGD
Sbjct:   26 VPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGD 244          
BLAST of CX053406 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.882e-65
Identity = 124/227 (54.63%), Postives = 155/227 (68.28%), Query Frame = 3
Query:   54 EVEAKAP-VPESVLKKQKRNEEWALAXXXXXXXXXXXXXXXXXXIYNRAKQYAKEYAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGD 731
            E + K P VPE++ KK++   E  +                   IY +AK Y KEY +  +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLIHEI TVG  FKEANNFLWPF              H+VEGGD
Sbjct:    5 EEKKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGD 231          
BLAST of CX053406 vs. ExPASy Swiss-Prot
Match: RL7_HUMAN (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.087e-64
Identity = 121/219 (55.25%), Postives = 151/219 (68.95%), Query Frame = 3
Query:   75 VPESVLKKQKRNEEWALAXXXXXXXXXXXXXXXXXXIYNRAKQYAKEYAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGD 731
            VPE++ KK++   E  +                   IY +AK Y KEY +  +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLIHEI TVG  FKEANNFLWPF              H+VEGGD
Sbjct:   14 VPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGD 232          
BLAST of CX053406 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 9.206e-64
Identity = 124/220 (56.36%), Postives = 156/220 (70.91%), Query Frame = 3
Query:   75 VPESVLKKQKRNEEWALAXXXXXXXXXXXXXXXXXXIYNRAKQYAKEYAEQEKVLIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXXR-NHYVEGGD 731
            VPE++LKK+K  E+                      I+ RA+ Y KEY + E+  I+L+R AK  G F++  EAKL+F+IRI+GIN I PK +KILQLLRL QI NGVF++V KAT  M+  VEP+V YGYPNLKSV+ELIYKRGYGK++KQR+ALTDNSIIE+ LGK+GIICMEDLIHEI TVGP+FK+A+NFLWPF            +  H++EGGD
Sbjct:   13 VPETLLKKRKSQEKARAERQAEIEKKKAANKEKRAVIFKRAETYVKEYRDVEREKIRLQRAAKQDGSFHIPAEAKLIFLIRIKGINKIPPKPRKILQLLRLLQINNGVFVRVTKATAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICMEDLIHEIYTVGPNFKQASNFLWPFKLSNPTGGFRTRKFKHFIEGGD 232          
The following BLAST results are available for this feature:
BLAST of CX053406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL74_ARATH1.456e-9375.4460S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL72_ARATH9.439e-9376.4460S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL73_ARATH3.587e-9276.3460S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL7_MACFA1.678e-6554.8260S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_MOUSE2.191e-6555.3160S ribosomal protein L7 OS=Mus musculus GN=Rpl7 P... [more]
RL7_BOVIN2.191e-6555.0760S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_RAT3.738e-6555.7160S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]
RL7_PONAB4.882e-6554.6360S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]
RL7_HUMAN1.087e-6455.2560S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... [more]
RL7_NEUCR9.206e-6456.3660S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_5H03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-5H03-O6-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053406 ID=CX053406; Name=CX053406; organism=Citrus sinensis; type=EST; length=731bp
GGCAGTCCGATCTTCTACGGCCAGGGGACACGACACTTAAACTCTAGATG
GCTGAAGTAGAAGCCAAGGCGCCAGTTCCAGAGTCTGTCTTGAAGAAGCA
GAAGAGGAATGAGGAATGGGCTTTGGCAAAGAAGCAGGAGCTTGAAACTT
CCAAGAAGAAGAAGCTCAAGAGTAGGAAGCTGATTTACAATAGGGCTAAG
CAGTATGCAAAGGAGTATGCTGAGCAGGAAAAGGTGTTGATTCAATTGAA
GCGTGAAGCTAAATTGAAAGGAGGGTTTTATGTTGACCCTGAAGCTAAGC
TTTTGTTTATCATCCGTATCCGTGGTATCAATGCCATTGACCCAAAGACA
AAGAAGATTTTGCAGCTTTTACGTTTAAGACAGATCTTCAATGGAGTTTT
TCTTAAAGTGAACAAAGCTACCATGAACATGCTTCATAGGGTTGAACCTT
ACGTCACCTACGGATACCCCAATTTGAAGAGTGTTAGGGAGCTCATTTAC
AAGAGGGGATATGGAAAGCTAGATAAGCAGAGAATTGCTTTGACTGATAA
CTCGATTATTGAGAAGGCTTTGGGCAAGTTCGGTATCATCTGCATGGAAG
ACCTGATCCATGAGATTATGACAGTGGGACCTCATTTTAAGGAGGCTAAC
AACTTTTTATGGCCATTTAAGCTTAAGGCACCATTGGGTGGCCTGAAGAA
GAAGAGGAACCACTATGTCGAGGGTGGTGAT
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