DR403442

Overview
NameDR403442
Unique NameDR403442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403442_ssr106 microsatellite DR403442_ssr106:106..115. BLAST: Citrus ESTs to Prunus persica proteins V1
DR403442_ssr7 microsatellite DR403442_ssr7:7..18. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403442 vs. ExPASy Swiss-Prot
Match: SEC3B_ARATH (Exocyst complex component SEC3B OS=Arabidopsis thaliana GN=SEC3B PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:  160 MAKSSADDEELRRACEAAIEGTKQKIVMSIRVAKGRGMWGKSGKLGRNMAKPRVLA 327
            MAKSSADDEELRRACEAAIEGTKQ IVMSIRVAK RG+WGKSGKLGR MAKPRVLA
Sbjct:    1 MAKSSADDEELRRACEAAIEGTKQSIVMSIRVAKSRGVWGKSGKLGRQMAKPRVLA 56
[Close]
BLAST of DR403442 vs. ExPASy Swiss-Prot
Match: SEC3A_ARATH (Exocyst complex component SEC3A OS=Arabidopsis thaliana GN=SEC3A PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:  160 MAKSSADDEELRRACEAAIEGTKQKIVMSIRVAKGRGMWGKSGKLGRNMAKPRVLA 327
            MAKSSADDEELRRACEAAIEGTKQ IVMSIRVAK RG+WGKSGKLGR MAKPRVLA
Sbjct:    1 MAKSSADDEELRRACEAAIEGTKQSIVMSIRVAKSRGVWGKSGKLGRQMAKPRVLA 56
The following BLAST results are available for this feature:
BLAST of DR403442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SEC3B_ARATH5.560e-2292.86Exocyst complex component SEC3B OS=Arabidopsis tha... [more]
SEC3A_ARATH5.560e-2292.86Exocyst complex component SEC3A OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241A17 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241A17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403442 ID=DR403442; Name=DR403442; organism=Citrus sinensis; type=EST; length=662bp
GGGGGCATTATTATTATTTTTATNNNNCTATTTAGACGGTCGGCGTCTGT
TAACAGTTAAAATGCAAAAAAATTCACGCACCGTGTGAGCTTCGCCGATT
TTATCCTCTCTCTCTTGCATCGTCAGAATCTGTGACGCTGTGATTAGGCC
GAAGAAGAAATGGCAAAGTCGAGCGCCGATGACGAGGAGCTTCGTCGAGC
TTGCGAGGCTGCAATTGAAGGCACAAAGCAGAAGATCGTCATGTCGATTC
GCGTCGCTAAAGGCCGAGGGATGTGGGGAAAATCTGGCAAATTAGGTCGC
AACATGGCTAAACCGAGAGTACTCGCACTCTCCAGTACGCTTACTTTCTT
TTCTAGCTATCAAATTTGGTTTCATTGTTCTGATCTGTTCTCATTCAGCA
TTGTTTTTGCTTTATTGGTTAGAGAAATGTTCTATTGTATTCTGACAATT
GATGTGTTGATGATGACCTGGATTAGTAGTATTAGTTCGAATTCAAGAAA
TGTGAAGTTACCGGGACACGCCTTTGAAATTTTGATGAAACTAGACTCAG
TCAGAATTCAGCTAGATTTTATTCCTTGTTAGGTTTTCAGATTTATCATC
AGTTACTTTGTGGTGATTGAGATTTTGAACTTTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
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