DR403403

Overview
NameDR403403
Unique NameDR403403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6089 contig Csv1_Contig6089:1..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403403 vs. ExPASy Swiss-Prot
Match: ZIP5_ARATH (Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.408e-24
Identity = 51/86 (59.30%), Postives = 65/86 (75.58%), Query Frame = 3
Query:  483 ECTCDPEDEDRDKTQALKYKLAAIASILVAGAIGVLLPVLGKTIRALSPERNIFFLIKAFAAGVILSTGFIHVLPDAFENLTSPCL 740
            +C C  ED++ +K  A KYK+AAI S+L AG IGV+ P+LGK   +L PE   FF+ KAFAAGVIL+TGF+HVLP+ +E LTSPCL
Sbjct:   30 KCECSHEDDEANKAGAKKYKIAAIPSVLAAGVIGVMFPLLGKFFPSLKPETTFFFVTKAFAAGVILATGFMHVLPEGYEKLTSPCL 115          
BLAST of DR403403 vs. ExPASy Swiss-Prot
Match: ZIP3_ARATH (Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.676e-23
Identity = 51/86 (59.30%), Postives = 65/86 (75.58%), Query Frame = 3
Query:  483 ECTCDPEDEDRDKTQALKYKLAAIASILVAGAIGVLLPVLGKTIRALSPERNIFFLIKAFAAGVILSTGFIHVLPDAFENLTSPCL 740
            +C C  ED+  +K  A KYK+AAI ++L+AG IGVL P+LGK   +L PE   FF+ KAFAAGVIL+TGF+HVLP+A+E L SPCL
Sbjct:   35 KCECSHEDDHENKAGARKYKIAAIPTVLIAGIIGVLFPLLGKVFPSLRPETCFFFVTKAFAAGVILATGFMHVLPEAYEMLNSPCL 120          
BLAST of DR403403 vs. ExPASy Swiss-Prot
Match: ZIP1_ARATH (Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.271e-23
Identity = 51/89 (57.30%), Postives = 69/89 (77.53%), Query Frame = 3
Query:  483 ECTCDPEDEDRDKTQ-ALKYKLAAIASILVAGAIGVLLPVLGKTIRALSPERNIFFLIKAFAAGVILSTGFIHVLPDAFENLTSPCLDE 746
            +CT   +   +D+ + A K KL +IA +LVAG +GV LP++GK I AL PE +IFF++KAFAAGVIL TGF+H+LPDAFE L+SPCL++
Sbjct:   31 DCTSHDDPVSQDEAEKATKLKLGSIALLLVAGGVGVSLPLIGKRIPALQPENDIFFMVKAFAAGVILCTGFVHILPDAFERLSSPCLED 119          
BLAST of DR403403 vs. ExPASy Swiss-Prot
Match: ZIP8_ARATH (Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.221e-19
Identity = 46/93 (49.46%), Postives = 62/93 (66.67%), Query Frame = 3
Query:  468 NVVRGECTCDPEDEDRDKTQALKYKLAAIASILVAGAIGVLLPVLGKTIRALSPERNIFFLIKAFAAGVILSTGFIHVLPDAFENLTSPCLDE 746
            + V  EC  D  D   DKT+AL  K+ AI +ILV   IGV  P+  + +  L P+  IF +IK FA+G+IL TGF+HVLPD+FE L+SPCL++
Sbjct:   27 STVPKECETDSTDSCIDKTKALPLKIVAIVAILVTSMIGVAAPLFSRYVTFLHPDGKIFMIIKCFASGIILGTGFMHVLPDSFEMLSSPCLED 119          
BLAST of DR403403 vs. ExPASy Swiss-Prot
Match: ZIP10_ARATH (Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.074e-18
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 3
Query:  516 DKTQALKYKLAAIASILVAGAIGVLLPVLGKTIRALSPERNIFFLIKAFAAGVILSTGFIHVLPDAFENLTSPCLDE 746
            DK +AL  KL +I SIL+   IGV LP   ++I A  PE++ F ++K+FA+G+ILSTGF+HVLPD+FE L+SPCL++
Sbjct:   44 DKNKALDLKLLSIFSILITSLIGVCLPFFARSIPAFQPEKSHFLIVKSFASGIILSTGFMHVLPDSFEMLSSPCLND 120          
BLAST of DR403403 vs. ExPASy Swiss-Prot
Match: ZIP12_ARATH (Probable zinc transporter 12 OS=Arabidopsis thaliana GN=ZIP12 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.767e-17
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 3
Query:  516 DKTQALKYKLAAIASILVAGAIGVLLPVLGKTIRALSPERNIFFLIKAFAAGVILSTGFIHVLPDAFENLTSPCLDE 746
            +K  ALKYK+ A  SIL+AG  GV LP+ G     L  E N F  +KAFAAGVIL+TGF+H+LPDA E+LTS CL E
Sbjct:   42 EKASALKYKIIAFFSILIAGVFGVCLPIFG-----LKTESNFFMYVKAFAAGVILATGFVHILPDATESLTSSCLGE 113          
BLAST of DR403403 vs. ExPASy Swiss-Prot
Match: ZIP7_ARATH (Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.954e-16
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 3
Query:  483 ECTCDPEDED-RDKTQALKYKLAAIASILVAGAIGVLLPVLGKTIRALSPERNIFFLIKAFAAGVILSTGFIHVLPDAFENLTSPCLDE 746
            EC  +  D    +  +A K K+ AI SILVA  IGV LP+  ++I AL P+R +  ++K  A+GVIL+TGF+HVLPD+F++LTS CL E
Sbjct:   36 ECKAESGDLSCHNNKEAQKLKIIAIPSILVASMIGVSLPLFSRSIPALGPDREMSVIVKTLASGVILATGFMHVLPDSFDDLTSKCLPE 124          
BLAST of DR403403 vs. ExPASy Swiss-Prot
Match: ZIP4_ARATH (Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 3
Query:  492 CDPEDED--RDKTQALKYKLAAIASILVAGAIGVLLPVLGKTIRALSPERNIFFLIKAFAAGVILSTGFIHVLPDAFENLTSPCLDE 746
            CD  + D  RD + A   K  AIASIL+AGA GV +P++G+  R L  E N+F   KAFAAGVIL+TGF+H+L    E L++PCL +
Sbjct:   10 CDAGESDLCRDDSAAFLLKFVAIASILLAGAAGVAIPLIGRNRRFLQTEGNLFVAAKAFAAGVILATGFVHMLAGGTEALSNPCLPD 96          
BLAST of DR403403 vs. ExPASy Swiss-Prot
Match: IRT1_ARATH (Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.425e-16
Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = 3
Query:  483 ECTCDPEDEDRDKTQALKYKLAAIASILVAGAIGVLLPVLGKTIRALSPERNIFFLIKAFAAGVILSTGFIHVLPDAFENLTSPCLDE 746
            EC  +  +   +K +AL  K+ AI  IL+A  IGV  P+  + +  L P+ NIF +IK FA+G+IL TGF+HVLPD+FE L+S CL+E
Sbjct:   25 ECGSESANPCVNKAKALPLKVIAIFVILIASMIGVGAPLFSRNVSFLQPDGNIFTIIKCFASGIILGTGFMHVLPDSFEMLSSICLEE 112          
BLAST of DR403403 vs. ExPASy Swiss-Prot
Match: IRT3_ARATH (Fe(2+) transport protein 3, chloroplastic OS=Arabidopsis thaliana GN=IRT3 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.654e-15
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  486 CTCDPEDEDRDKTQALKYKLAAIASILVAGAIGVLLPVLGKTIRALSPERNIFFLIKAFAAGVILSTGFIHVLPDAFENLTSPCLDE 746
            C     D  RD + A   K  AIASIL+AGA GV +P++G+  R L  + N+F   KAFAAGVIL+TGF+H+L    E L +PCL +
Sbjct:   10 CNASESDLCRDDSAAFLLKFVAIASILLAGAAGVTIPLIGRNRRFLQTDGNLFVTAKAFAAGVILATGFVHMLAGGTEALKNPCLPD 96          
The following BLAST results are available for this feature:
BLAST of DR403403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ZIP5_ARATH7.408e-2459.30Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5... [more]
ZIP3_ARATH3.676e-2359.30Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3... [more]
ZIP1_ARATH6.271e-2357.30Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1... [more]
ZIP8_ARATH3.221e-1949.46Probable zinc transporter 8 OS=Arabidopsis thalian... [more]
ZIP10_ARATH6.074e-1854.55Probable zinc transporter 10 OS=Arabidopsis thalia... [more]
ZIP12_ARATH1.767e-1758.44Probable zinc transporter 12 OS=Arabidopsis thalia... [more]
ZIP7_ARATH1.954e-1649.44Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7... [more]
ZIP4_ARATH5.685e-1650.57Zinc transporter 4, chloroplastic OS=Arabidopsis t... [more]
IRT1_ARATH7.425e-1647.73Fe(2+) transport protein 1 OS=Arabidopsis thaliana... [more]
IRT3_ARATH1.654e-1548.28Fe(2+) transport protein 3, chloroplastic OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244O12 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244O12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403403 ID=DR403403; Name=DR403403; organism=Citrus sinensis; type=EST; length=748bp
GGGGCTAATAATTACCATAATTTTACAAAACAAGAAACAACCCATGTACA
GAAGTTTGATTCTACTCGTAACTTGATTCTTACGGAATCGTGTCCTCATT
ATTTCTTCAAAGCTACTTTTGAGATGATCATCGAACGCTAAAGCGAATTA
AACCTTAATTGGTACTTAGCGTTTTAATCCAATCTCTTCTGTTTGTTCTA
TTAATTTCTTTTATTTTGTTTTCTTATTCTCTTTCAGTTTCACTCGATGG
GGTCGGTGCATGGGTCACAATGATTTTATGATGCTCTAGAGATCAACAAT
CACGCGCTTTCACATAAACTCTACGCTATAAACAATTTCCTCTCAAATAT
TTTCATCATACAAAAATAAAAATCGTGATATTGTTTTCAGATTTCAGATT
CTTTATCATGATCACTTCTCATCGTCTTTTCATCACTTTCTTTTGCATTC
TTCTAATACTACTTCCCAACGTAGTACGAGGAGAATGCACGTGCGATCCT
GAAGACGAGGATCGAGACAAGACTCAAGCCTTAAAATATAAACTCGCCGC
AATCGCGTCGATACTCGTGGCCGGAGCCATCGGAGTTTTACTTCCCGTCC
TCGGAAAAACTATCCGGGCACTAAGTCCGGAGAGAAATATTTTCTTCCTA
ATCAAGGCCTTTGCCGCCGGAGTTATATTATCGACGGGGTTCATCCACGT
GCTTCCCGACGCCTTCGAGAACTTAACGTCGCCCTGCCTCGATGAACA
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