DR403398

Overview
NameDR403398
Unique NameDR403398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11023 contig Csv1_Contig11023:81..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB1_PETHY (Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1)

HSP 1 Score: 414.075 bits (1063), Expect = 3.908e-115
Identity = 200/219 (91.32%), Postives = 211/219 (96.35%), Query Frame = 2
Query:   71 MTKQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYME 727
            MTKQ   WSPYDNNGGTCVA+AGADYCV AADTRMSTGY+IL+RDYSKIIKLADKCVMASSGFQADV+ALQK+LA+RHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLD+EGKGCV+TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEA+DLVKTCFASATERDIYTGD+LEIV+LN  GI RE ME
Sbjct:    1 MTKQQANWSPYDNNGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKLADKCVMASSGFQADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAIDLVKTCFASATERDIYTGDRLEIVILNASGIRREEME 219          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB1_ARATH (Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1 SV=2)

HSP 1 Score: 387.497 bits (994), Expect = 3.917e-107
Identity = 188/219 (85.84%), Postives = 202/219 (92.24%), Query Frame = 2
Query:   71 MTKQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYME 727
            MTKQH  WSPYDNNGGTCVAIAG+DYCV AADTRMSTGYSILSRDYSKI KLAD+ V++SSGFQADVKALQK+L +RHLIYQHQHNKQMSCPAM QLLSNTLY+KRFFPYY+FNVLGGLD EGKGCV+TYDAVGSYERVGY +QGSGSTLIMPFLDNQLKSPSPLLLP QD+ TPLSEAEAVDLVKT FASATERDIYTGDKLEI++L  DGI  E M+
Sbjct:    1 MTKQHANWSPYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAVDLVKTVFASATERDIYTGDKLEIMILKADGIKTELMD 219          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB1_ORYSJ (Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica GN=PBF1 PE=2 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 1.948e-98
Identity = 172/209 (82.30%), Postives = 191/209 (91.39%), Query Frame = 2
Query:  101 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYME 727
            Y+NNGGTCVAIAGADYCV AADTR+S GY+IL+RD+SKI +LADKC +ASSGFQ D+KAL K LAAR L+YQHQHNK+MSCPAM QLLSNTLYYKRFFPYY+FNVLGGLD+EGKGCV+TYDAVGSYER GYS+QG+GS LIMP LDNQLKSPSPLLLPA+DAVTPLSE EAVDLVK  FASATERDIYTGDKLEIVV+NK G  REY++
Sbjct:    9 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTYDAVGSYERTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFASATERDIYTGDKLEIVVINKAGTKREYID 217          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB1_DICDI (Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.179e-57
Identity = 114/216 (52.78%), Postives = 150/216 (69.44%), Query Frame = 2
Query:   83 HPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTG-YSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYME 727
            H  +  Y +NGGT +A+AG DYCV A DTRMS G Y I +R Y+KI +L  KCV+A+SG QAD  ALQK L +    ++ +H K MS PA+ Q LSNTLYYKRFFPYY+FN++ G+D +G+G ++TYDAVGS+ERV YSSQGSG+ L++P LDNQ+   +  ++     V   S  + V  VK    SA ERDIYTGD  +IVV++K+G+H E  E
Sbjct:   20 HGRFEAYVDNGGTVLAVAGKDYCVIAGDTRMSDGGYGIQTRKYTKIFQLTKKCVLATSGMQADTIALQKRLKSMLESFEKEHGKPMSTPAIAQFLSNTLYYKRFFPYYTFNLVAGVDEQGEGWIWTYDAVGSHERVKYSSQGSGNQLVIPLLDNQVAKFNQQIVEGNKDV---SCEQVVSFVKDSITSAGERDIYTGDFADIVVVDKNGVHWEKFE 232          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB1B_CARAU (Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.787e-51
Identity = 101/209 (48.33%), Postives = 137/209 (65.55%), Query Frame = 2
Query:   92 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 718
            +SPY  NGGT +A+AG D+ + A+DTR+S GYSI SRD  K  KL D  V+  SGF  D   L K++ AR  +Y+H +NK M+  A+  +LS  LY +RFFPYY +N++GGLD EG+G VY++D VGSY+R  Y + GS S ++ P LDNQ+   +           PLS+ +AV LVK  F SA ERD+YTGD L+I ++ K+GI  E
Sbjct:   26 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREE 230          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB1A_CARAU (Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.787e-51
Identity = 101/209 (48.33%), Postives = 137/209 (65.55%), Query Frame = 2
Query:   92 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 718
            +SPY  NGGT +A+AG D+ + A+DTR+S GYSI SRD  K  KL D  V+  SGF  D   L K++ AR  +Y+H +NK M+  A+  +LS  LY +RFFPYY +N++GGLD EG+G VY++D VGSY+R  Y + GS S ++ P LDNQ+   +           PLS+ +AV LVK  F SA ERD+YTGD L+I ++ K+GI  E
Sbjct:   27 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREE 231          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB1_HUMAN (Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 5.748e-50
Identity = 100/209 (47.85%), Postives = 136/209 (65.07%), Query Frame = 2
Query:   92 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 718
            +SPY  NGGT +AIAG D+ + A+DTR+S G+SI +RD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+  A+  +LS  LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PLS   A+ LVK  F SA ERD+YTGD L I ++ K+GI  E
Sbjct:   30 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREE 234          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB1_BOVIN (Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.805e-50
Identity = 99/209 (47.37%), Postives = 137/209 (65.55%), Query Frame = 2
Query:   92 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 718
            +SPY  NGGT +AIAG D+ + A+DTR+S G+SI +RD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+  A+  +LS  LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PLS   A+ LVK  F SA ERD+YTGD L++ ++ K+GI  E
Sbjct:   30 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKDVFISAAERDVYTGDALKVCIVTKEGIRGE 234          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB1_MOUSE (Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.281e-49
Identity = 99/209 (47.37%), Postives = 136/209 (65.07%), Query Frame = 2
Query:   92 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 718
            +SPY  NGGT +AIAG D+ + A+DTR+S G+SI +RD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+  A+  +LS  LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PL+   A+ LVK  F SA ERD+YTGD L I ++ K+GI  E
Sbjct:   29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREE 233          
BLAST of DR403398 vs. ExPASy Swiss-Prot
Match: PSB1_RAT (Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 1.084e-48
Identity = 98/209 (46.89%), Postives = 135/209 (64.59%), Query Frame = 2
Query:   92 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 718
            +SPY  NGGT +AIAG D+ + A+DTR+S G+SI +RD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+  A+  +LS  LY +RFFPYY +N++ GLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PL+   A+ LVK  F SA ERD+YTGD L I ++ K+GI  E
Sbjct:   29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREE 233          
The following BLAST results are available for this feature:
BLAST of DR403398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PSB1_PETHY3.908e-11591.32Proteasome subunit beta type-1 OS=Petunia hybrida ... [more]
PSB1_ARATH3.917e-10785.84Proteasome subunit beta type-1 OS=Arabidopsis thal... [more]
PSB1_ORYSJ1.948e-9882.30Proteasome subunit beta type-1 OS=Oryza sativa sub... [more]
PSB1_DICDI2.179e-5752.78Proteasome subunit beta type-1 OS=Dictyostelium di... [more]
PSB1B_CARAU1.787e-5148.33Proteasome subunit beta type-1-B OS=Carassius aura... [more]
PSB1A_CARAU1.787e-5148.33Proteasome subunit beta type-1-A OS=Carassius aura... [more]
PSB1_HUMAN5.748e-5047.85Proteasome subunit beta type-1 OS=Homo sapiens GN=... [more]
PSB1_BOVIN9.805e-5047.37Proteasome subunit beta type-1 OS=Bos taurus GN=PS... [more]
PSB1_MOUSE1.281e-4947.37Proteasome subunit beta type-1 OS=Mus musculus GN=... [more]
PSB1_RAT1.084e-4846.89Proteasome subunit beta type-1 OS=Rattus norvegicu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244O04 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244O04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403398 ID=DR403398; Name=DR403398; organism=Citrus sinensis; type=EST; length=727bp
GGGGGAAACACTGGAAACGAACCAAATTCATATTGTCCAAATTTCAAACC
CTAATTACTGACAATTCATCATGACGAAGCAGCATCCCGCATGGTCTCCA
TACGACAATAATGGAGGAACTTGTGTTGCGATTGCCGGAGCTGATTACTG
TGTAACCGCTGCCGACACTCGAATGTCAACCGGTTACAGTATCCTCTCCC
GCGATTACTCCAAAATCATTAAACTGGCAGACAAATGTGTTATGGCCTCT
TCTGGTTTTCAAGCTGATGTCAAAGCCTTACAAAAACTCTTGGCAGCAAG
GCATTTGATCTATCAGCATCAGCACAACAAGCAAATGAGCTGCCCTGCAA
TGGGCCAACTACTCTCCAACACCCTGTACTACAAACGTTTCTTTCCTTAC
TATTCATTTAATGTCTTGGGTGGGCTTGACAATGAAGGGAAGGGTTGTGT
CTACACATATGATGCTGTTGGTTCCTATGAGAGGGTTGGATATAGCTCCC
AGGGTTCTGGTTCCACGCTCATCATGCCATTCCTCGATAACCAACTAAAG
TCTCCCAGTCCTCTCCTATTGCCTGCCCAGGATGCTGTTACTCCTCTTTC
AGAGGCTGAAGCAGTTGATTTGGTCAAAACTTGTTTTGCATCAGCAACTG
AGAGGGACATATACACGGGAGACAAACTTGAAATTGTTGTCCTAAACAAA
GATGGTATTCATCGTGAATACATGGAA
back to top