EY692786

Overview
NameEY692786
Unique NameEY692786
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4228 contig Csv1_Contig4228:941..1560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY692786 vs. ExPASy Swiss-Prot
Match: HM13_HUMAN (Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 7.567e-17
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 3
Query:  141 LTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESK----TAAVVSQESSDAKTSKKVE 338
            LTI +M+ F+ AQPALLY+VPA IGF     +  GEV ++  ++ES      A   S+E ++A  SK +E
Sbjct:  304 LTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEESNPKDPAAVTESKEGTEASASKGLE 373          

HSP 2 Score: 53.1434 bits (126), Expect = 7.567e-17
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 2
Query:   11 AMLGLGDIVIPGIFVALALRFDVSRGKGSR-YFKSAFLGYTVG 136
            AMLGLGD+VIPGIF+AL LRFD+S  K +  YF ++F  Y  G
Sbjct:  259 AMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFG 301          
BLAST of EY692786 vs. ExPASy Swiss-Prot
Match: HM13_MOUSE (Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.278e-16
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 3
Query:  141 LTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESK-----TAAVVSQESSDAKTSKKVE 338
            LTI +M+ F+ AQPALLY+VPA IGF     +  GEV ++  ++ES            +ES++A  SK++E
Sbjct:  304 LTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVAEMFSYEESNPKDPAAETESKEESTEASASKRLE 374          

HSP 2 Score: 53.5286 bits (127), Expect = 1.278e-16
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 2
Query:   11 AMLGLGDIVIPGIFVALALRFDVSRGKGSR-YFKSAFLGYTVG 136
            AMLGLGDIVIPGIF+AL LRFD+S  K +  YF ++F  Y  G
Sbjct:  259 AMLGLGDIVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFG 301          
The following BLAST results are available for this feature:
BLAST of EY692786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HM13_HUMAN7.567e-1742.86Minor histocompatibility antigen H13 OS=Homo sapie... [more]
HM13_MOUSE1.278e-1640.85Minor histocompatibility antigen H13 OS=Mus muscul... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-004-D09-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692786 ID=EY692786; Name=EY692786; organism=Citrus sinensis; type=EST; length=618bp
CCACGCGTCCGCCATGCTTGGACTTGGCGACATTGTAATTCCTGGTATCT
TTGTGGCACTAGCATTGCGATTTGATGTGTCCAGAGGGAAAGGAAGCCGG
TACTTCAAGAGCGCTTTTCTGGGATATACAGTTGGTAGTCCTAACAATCA
TTGTCATGAACTGGTTTCAGGCTGCACAGCCTGCACTTTTGTATATTGTG
CCTGCTGTAATTGGATTCTTGGCCGCTCACTGCATATGGAACGGCGAAGT
CAAACAGTTGTTGGAGTTTGATGAGTCTAAGACTGCCGCGGTTGTGTCAC
AAGAAAGTAGCGATGCCAAAACTAGCAAGAAAGTCGAATAATTTAAAATG
CCATCTACAATGGACCATTTTAGCAAAGAAATATCTTTTATTTCTCCTTT
TGAGGATCAACGCTGTGCAAGCTCAATCCAAGCTAACTTATGCAACCTGC
AAACAATTGTAAAAGATTTTGGCATTAAGCAAGAAATAATATTTTAGCCT
CTTATAGTGAGACAACTATAGTGAGACAACTATTTCAGATATATTTTGTG
ATTTTTTTCTTTATTTAATTTAATTTTTTAAATGCATTATACTTACTGAG
GAAAAAAAAAAAAAAAAA
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