DR403379

Overview
NameDR403379
Unique NameDR403379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403379_ssr42 microsatellite DR403379_ssr42:42..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6008 contig Csv1_Contig6008:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR403379 vs. ExPASy Swiss-Prot
Match: RSBQ_BACSU (Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis GN=rsbQ PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.445e-37
Identity = 76/152 (50.00%), Postives = 103/152 (67.76%), Query Frame = 3 
Query:  111 HNVKVTGPGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVALYDNMGAGTTNPDYFDFNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLND-VDYYGGFEQEELDQLFEAMRSNYKAWCSGFA 563
            ++VKV G G+  I+ A GFG DQSVW  + P   +D+RV L+D +G+G ++   +D NRY TL+GYA D+L + E L +   + VGHSV A+IG +ASI RP+LF+ LVM+  SP YLND  +YYGGFE+E+L  L E M  NY  W + FA
Sbjct:    9 NHVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFA 160
The following BLAST results are available for this feature:
BLAST of DR403379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RSBQ_BACSU9.445e-3750.00Sigma factor sigB regulation protein rsbQ OS=Bacil... [more]
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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244N03 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244N03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403379 ID=DR403379; Name=DR403379; organism=Citrus sinensis; type=EST; length=725bp
GGGGAAGAACAAAAACGCTTTCACTAATCACTTGACACCACAAAAGAAAA
GAAAAGAAAAGAAAGCTCCGCAGATTCAGGCGAGGCGAAATGGGAATCGT
GGAAGAAGCTCACAACGTGAAAGTGACGGGGCCAGGGGAGCAAGTGATAG
TGTTGGCTCACGGCTTCGGCACCGACCAGTCGGTGTGGAAGCACCTCGTG
CCTCATCTCGTCGACGATTACCGCGTCGCTTTGTATGACAACATGGGCGC
TGGCACCACCAATCCCGACTACTTTGACTTCAACAGATACTCCACCCTCG
AAGGCTATGCCCTTGATTTGCTTGCTATTTTAGAAGAGCTGCAAATTGAC
TCTTGTATTCTCGTCGGTCACTCTGTTTCCGCCATGATTGGCGCCATCGC
CTCCATCTCCCGCCCTGATCTCTTCACTAAACTCGTCATGATCTCCGGCT
CTCCCAGGTATCTCAATGATGTGGATTACTACGGAGGATTTGAGCAAGAG
GAGCTGGATCAGCTTTTTGAAGCAATGAGGTCAAATTACAAGGCATGGTG
CTCTGGATTCGCCCCGCTAGCTGTCGGCGGGGACATGGACTCGGTGGCTG
TTCAAGAATTTAGCCGAACCTTATTCAACATGAGACCAGACATAGCTCTT
GAGTGTGGCACAAACCATTTTCCAAAGTGACATGAGGNNNATTCTCGGCC
TTGTCAGTGTCCCATGCCACATAAT
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