DR403336

Overview
NameDR403336
Unique NameDR403336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig92 contig Csv1_Contig92:195..963. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: QKIL5_ARATH (KH domain-containing protein At1g09660 OS=Arabidopsis thaliana GN=At1g09660 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.559e-32
Identity = 65/81 (80.25%), Postives = 75/81 (92.59%), Query Frame = 3
Query:    3 GSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLREE 245
            GSVKD++KEEKLK KPGYEHL EPLHVL+EAE PEDIINSRL+HAV  LE+LLKP+DES+DHYK++QL+ELA LNGTLREE
Sbjct:  192 GSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKREQLKELAALNGTLREE 272          
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: QKIL2_ARATH (KH domain-containing protein At5g56140 OS=Arabidopsis thaliana GN=At5g56140 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.982e-27
Identity = 63/106 (59.43%), Postives = 79/106 (74.53%), Query Frame = 3
Query:    3 GSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLREEXXXXXXXXXXXXXXFNNAGMKRAKT 320
            GS+KD IKEE ++ KPGYEHLNEPLH+LVEAE P +I+++RL  A  IL++LL P++E+ D YKKQQLRELA+LNGTLREE              +N+ GMKRAKT
Sbjct:  211 GSIKDPIKEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREE----GSPMSGSVSPYNSLGMKRAKT 312          
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: QKIL1_ARATH (KH domain-containing protein At4g26475 OS=Arabidopsis thaliana GN=At4g26475 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.416e-27
Identity = 62/106 (58.49%), Postives = 79/106 (74.53%), Query Frame = 3
Query:    3 GSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLREEXXXXXXXXXXXXXXFNNAGMKRAKT 320
            GS+KD IKE+ ++ KPGYEHLNEPLH+LVEAE P +I+++RL  A  IL++LL PV+E+ D YKKQQLRELA+LNG+LREE              +N+ GMKRAKT
Sbjct:  205 GSIKDPIKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQQLRELALLNGSLREE----GSPMSGSISPYNSLGMKRAKT 306          
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: QKIL4_ARATH (KH domain-containing protein At3g08620 OS=Arabidopsis thaliana GN=At3g08620 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.088e-25
Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 3
Query:    3 GSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLREEXXXXXXXXXXXXXXFNNAGMKRAKTGR 326
            GS+KD  KEEKLK KPGYEHLNE LH+L+EA+ P DI++ +L  A  I+E L+KPVDES D+ K+QQLRELA+LN  LRE               FN+  MKR KTGR
Sbjct:  180 GSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQDYIKRQQLRELALLNSNLREN----SPGPSGSVSPFNSNAMKRPKTGR 283          
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: QKIL3_ARATH (KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.277e-22
Identity = 59/108 (54.63%), Postives = 72/108 (66.67%), Query Frame = 3
Query:    3 GSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLN-GTLREEXXXXXXXXXXXXXXFNNAGMKRAKTG 323
            GS+KD  KE+KL+ +PGYEHLNE LH+L+EA+ P  I+  RL  A  I+E LLKPVDES D  K+QQLRELA+LN   LREE              FN++G KR KTG
Sbjct:  181 GSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDESQDFIKRQQLRELALLNSNNLREE--SPGPSGGGSVSPFNSSG-KRPKTG 285          
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: QKI_RAT (Protein quaking OS=Rattus norvegicus GN=Qki PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    3 GSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLRE 242
            GS++D  KEE+ + KP +EHLNE LHVL+  E  ++    +L  AV  ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  127 GSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: QKI_PIG (Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    3 GSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLRE 242
            GS++D  KEE+ + KP +EHLNE LHVL+  E  ++    +L  AV  ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  127 GSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: QKI_MOUSE (Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    3 GSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLRE 242
            GS++D  KEE+ + KP +EHLNE LHVL+  E  ++    +L  AV  ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  127 GSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: QKI_HUMAN (Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    3 GSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLRE 242
            GS++D  KEE+ + KP +EHLNE LHVL+  E  ++    +L  AV  ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  127 GSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of DR403336 vs. ExPASy Swiss-Prot
Match: QKI_HORSE (Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    3 GSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLRE 242
            GS++D  KEE+ + KP +EHLNE LHVL+  E  ++    +L  AV  ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:  127 GSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
The following BLAST results are available for this feature:
BLAST of DR403336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
QKIL5_ARATH4.559e-3280.25KH domain-containing protein At1g09660 OS=Arabidop... [more]
QKIL2_ARATH1.982e-2759.43KH domain-containing protein At5g56140 OS=Arabidop... [more]
QKIL1_ARATH4.416e-2758.49KH domain-containing protein At4g26475 OS=Arabidop... [more]
QKIL4_ARATH1.088e-2556.48KH domain-containing protein At3g08620 OS=Arabidop... [more]
QKIL3_ARATH4.277e-2254.63KH domain-containing protein At2g38610 OS=Arabidop... [more]
QKI_RAT1.801e-1247.50Protein quaking OS=Rattus norvegicus GN=Qki PE=1 S... [more]
QKI_PIG1.801e-1247.50Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1[more]
QKI_MOUSE1.801e-1247.50Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1[more]
QKI_HUMAN1.801e-1247.50Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1[more]
QKI_HORSE1.801e-1247.50Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244K09 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244K09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403336 ID=DR403336; Name=DR403336; organism=Citrus sinensis; type=EST; length=769bp
GGGGTTCAGTCAAGGATTCAATAAAGGAAGAAAAACTTAAAGATAAACCT
GGATATGAGCATCTTAATGAGCCACTGCACGTGTTAGTGGAGGCCGAATT
TCCAGAGGATATAATAAATTCCCGCTTGGATCATGCTGTAGCAATACTAG
AGAACCTTTTGAAGCCCGTGGATGAATCCTTGGATCATTACAAGAAGCAA
CAACTGCGGGAATTAGCTATGCTGAACGGTACTCTAAGAGAAGAAAGCCC
AAGCATGGGTCCGAGTATGAGTCCTAGTATGTCGCCCTTTAACAATGCTG
GAATGAAACGCGCCAAGACCGGAAGATAACATGTTATACATATCAATGAT
GAAATGGACCATCGATGAACCACTGGATCACTGCAGCTGATGGATTGCTG
TCCTGACGATCTTCATTGGTTTTGTTCTTCAGAACCTTGGGGAGGGACTT
GATTCGAGAACAGTTGGTCGAAATCCTGAGTTAGTTTTGCGCTCAACTGT
TGGCATCTCAGACGGGTATCTGCTTCCCATGTTTGTGTTCTATATAGCTA
ACATGTTTGTCAGCAATCATGATTCTTTGGTGTATTATTCCTCTTGAGTA
TCGAATTTGTTACTTAATGGATTAAAAGAAACTCATTCCCTAATTAATTT
TTATTTGCTATTCCAGCCCGCAGCTGAAGTGATATGACCTTTGAATGTAC
TTTGCTAGATACTTTTGCCTGCTATTCACTTGAAACAGATGACCAATAAT
TAATAATTGCTTTGTAATT
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