DR403334

Overview
NameDR403334
Unique NameDR403334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403334_ssr9 microsatellite DR403334_ssr9:9..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:121..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403334 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 3
Query:   87 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTAVVMDVQAAETEGNCKCGPTCPCVNCTCG 284
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of DR403334 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.213e-19
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 3
Query:   87 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTAVVMDVQAAETEGNCKCGPTCPCVNCTC 281
            MSD CGNCDCAD SQCVKKG+S   D VETD S++   VVM V AAE+ G CKCG +CPCVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIED-VVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of DR403334 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.691e-18
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 3
Query:   96 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTAVVMDVQAAETEGNCKCGPTCPCVNCTCGS 287
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V   V++  +AAE +G CKCG  C C +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVD-EVIVAAEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of DR403334 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.229e-16
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 3
Query:   87 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTAVVMDVQAAETEGNCKCGPTCPCVNCTC 281
            MS  C NCDC+D SQC KKG S+    VET+   + T V+MD  AAE  GNCKCGP+C CV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDT-VIMDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of DR403334 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.062e-15
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 3
Query:   87 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTAVVMDVQAAETEGNCKCGPTCPCVNCTCG 284
            MS  C NCDCAD +QCVKKG+SY    VET+   + T V +D  AAE +G CKCG  C CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDT-VFVDAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of DR403334 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.812e-15
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 3
Query:   87 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTAVVMDVQAAETEGNCKCGPTCPCVNCTCG 284
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DR403334 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.812e-15
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 3
Query:   87 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTAVVMDVQAAETEGNCKCGPTCPCVNCTCG 284
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DR403334 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.944e-14
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 3
Query:   87 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTAVVMDVQAAETEGNCKCGPTCPCVNCTCG 284
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S    A   +V   E +G CKC   C C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFEMA--EEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of DR403334 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.779e-13
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 3
Query:   87 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTAVVMDVQAAETEGNCKCGPTCPCVNCTCG 284
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S    A   +V   E +G CKC   C C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFEMA--EEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of DR403334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA1.808e-2369.70Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE1.213e-1969.23Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC8.691e-1857.81Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV6.229e-1656.92Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO1.062e-1557.58Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ1.812e-1554.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.812e-1554.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ9.944e-1451.52Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI3.779e-1350.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244K07 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244K07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403334 ID=DR403334; Name=DR403334; organism=Citrus sinensis; type=EST; length=590bp
GGGATCACAGCAAAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTCTATT
TCCAGTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTG
CGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCA
GCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGCT
GTTGTCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGG
CCCCACCTGCCCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAA
ACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGG
GGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTT
CGTTTTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTG
TCACCCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAAT
ATATGGCCATGGCCATGACCGTGGCCTTGTGTGGTTTAATTTTAATGTAT
TATTGTTAGACGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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