FC922063

Overview
NameFC922063
Unique NameFC922063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922063 vs. ExPASy Swiss-Prot
Match: ZN363_HUMAN (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.175e-28
Identity = 55/119 (46.22%), Postives = 71/119 (59.66%), Query Frame = -3
Query:  387 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 743
            C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C+SYNT    G
Sbjct:  136 CIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 253          
BLAST of FC922063 vs. ExPASy Swiss-Prot
Match: ZN363_MOUSE (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.415e-28
Identity = 55/119 (46.22%), Postives = 70/119 (58.82%), Query Frame = -3
Query:  387 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 743
            C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C SYNT    G
Sbjct:  136 CIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAGG 253          
BLAST of FC922063 vs. ExPASy Swiss-Prot
Match: YERG_SCHPO (Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe GN=SPAC2F3.16 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.089e-20
Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = -3
Query:  402 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNT 743
            C+E +   +CP+C EY+F +R+ VI L C H +H+ C +E    + Y CP C K++ +++ ++   D EI   PMP  Y      I CNDC    + ++H L  KC +C SYNT
Sbjct:  262 CIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTN-YRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNT 374          
The following BLAST results are available for this feature:
BLAST of FC922063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZN363_HUMAN3.175e-2846.22RING finger and CHY zinc finger domain-containing ... [more]
ZN363_MOUSE5.415e-2846.22RING finger and CHY zinc finger domain-containing ... [more]
YERG_SCHPO7.089e-2037.72Uncharacterized RING finger protein C2F3.16 OS=Sch... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1DB03RM1 SLH Citrus sinensis cDNA clone KN0AAM1DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922063 ID=FC922063; Name=FC922063; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTGAACTAAACAAGAAAAACATTACTTATTTGCAAAGTGAGTAA
GAAGTTCATCCCAGCACCAGTATGAGCTAGTTGCTATGACTATTTACATC
AGTTGCCTTGAGGAAACATACAACAAAGAACAAATGAAATGAAAAACAAG
AAGACAGAAAACAACACCATGAGCAGATTCAAACACCACGAGCTAGACTA
GAAACACCACGAGGAAGACTAACTGCTCCCCACAGAGCAAGTTGTAGATG
CAGCCACTACCCCATAATGAGTAACGACTGTGGCTGAGATGGTTGAAAAG
ATTAATTAAGACCCGAACCCATCCACATCAAACAGAGAGTTCCCATCACC
ATCACCATCATTGCTAACAATACTGCCACTTGCTCAGCCCCTGGTCAAGC
GAGTGTTGTAGGACTTGCAGTTTGGGCACTTCTGAGCCAGCACATGGAAC
TGGACATTAGAGGTCTTACCACAGTCATTGCAAAGGATCCAAACCTTTTT
ATTTAGGTAAGCTTCTGGCATTGGAGTAGCCGCTATCTCCCTGTCATATT
TCTCCCATACTTTGGACATGTCACAGACTGACTTGGAGCAGATAGGACAG
GCATATTGATGATGTTCCCGCATCTCCTTCAAGCAATTTTTGTGAATGGT
ATGCCCACACGGCAAGACAATTACATCCTGTCTTGTCTCGAATAAATACT
CACAGCAGACAGGGCAGTCATGATGCATTGCACCTTCTACACATGGGGTG
GCTGTTCTTCAAAAGCATTGAGTAGCAGCATCTACACTTG
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