CX053001

Overview
NameCX053001
Unique NameCX053001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053001 vs. ExPASy Swiss-Prot
Match: EM6_ARATH (Em-like protein GEA6 OS=Arabidopsis thaliana GN=EM6 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.529e-34
Identity = 68/90 (75.56%), Postives = 80/90 (88.89%), Query Frame = 2
Query:  101 MASEQERAELDQRARQGETVVPGGTRGKSLEAQEHLAEGRSRGGQTRKEQIGTEGYQEMGRKGGLSTVDKSGEERAAEEGISFDESKYKT 370
            MAS+QE+ +LD+RA++GETVVPGGT GKS EAQ+HLAEGRSRGGQTRKEQ+GTEGYQ+MGRKGGLST DK G E A EEG+  DESK++T
Sbjct:    1 MASQQEKKQLDERAKKGETVVPGGTGGKSFEAQQHLAEGRSRGGQTRKEQLGTEGYQQMGRKGGLSTGDKPGGEHAEEEGVEIDESKFRT 90          
BLAST of CX053001 vs. ExPASy Swiss-Prot
Match: EM4_WHEAT (Em protein H5 OS=Triticum aestivum GN=EMH5 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.634e-34
Identity = 68/89 (76.40%), Postives = 81/89 (91.01%), Query Frame = 2
Query:  104 ASEQERAELDQRARQGETVVPGGTRGKSLEAQEHLAEGRSRGGQTRKEQIGTEGYQEMGRKGGLSTVDKSGEERAAEEGISFDESKYKT 370
            + +QER+ELD+ AR+GETVVPGGT GKSLEAQEHLA+GRSRGG+TRKEQ+G EGY+EMGRKGGLST+++SG ERAA EGI  DESK+KT
Sbjct:    3 SGQQERSELDRMAREGETVVPGGTGGKSLEAQEHLADGRSRGGETRKEQLGEEGYREMGRKGGLSTMEESGGERAAREGIEIDESKFKT 91          
BLAST of CX053001 vs. ExPASy Swiss-Prot
Match: EMB1_DAUCA (EMB-1 protein OS=Daucus carota GN=EMB-1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.358e-34
Identity = 70/90 (77.78%), Postives = 78/90 (86.67%), Query Frame = 2
Query:  101 MASEQERAELDQRARQGETVVPGGTRGKSLEAQEHLAEGRSRGGQTRKEQIGTEGYQEMGRKGGLSTVDKSGEERAAEEGISFDESKYKT 370
            MAS+QE+ ELD RARQGETVVPGGT GKSLEAQ+HLAEGRS+GGQTRKEQ+G EGY EMGRKGGLS  D SG ERA +EGI  DESK++T
Sbjct:    1 MASQQEKKELDARARQGETVVPGGTGGKSLEAQQHLAEGRSKGGQTRKEQLGGEGYHEMGRKGGLSNNDMSGGERAEQEGIDIDESKFRT 90          
BLAST of CX053001 vs. ExPASy Swiss-Prot
Match: EMP1_ORYSJ (Embryonic abundant protein 1 OS=Oryza sativa subsp. japonica GN=EMP1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.229e-33
Identity = 69/87 (79.31%), Postives = 78/87 (89.66%), Query Frame = 2
Query:  110 EQERAELDQRARQGETVVPGGTRGKSLEAQEHLAEGRSRGGQTRKEQIGTEGYQEMGRKGGLSTVDKSGEERAAEEGISFDESKYKT 370
            +Q R+ELD+ AR+G+TVVPGGT GKSLEAQE+LAEGRSRGGQTRKEQ+G EGY+EMGRKGGLST D+SG ERAA EGI  DESKYKT
Sbjct:    7 QQGRSELDRMAREGQTVVPGGTGGKSLEAQENLAEGRSRGGQTRKEQMGEEGYREMGRKGGLSTGDESGGERAAREGIDIDESKYKT 93          
BLAST of CX053001 vs. ExPASy Swiss-Prot
Match: EM3_WHEAT (Em protein H2 OS=Triticum aestivum GN=EMH2 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.063e-32
Identity = 67/89 (75.28%), Postives = 79/89 (88.76%), Query Frame = 2
Query:  104 ASEQERAELDQRARQGETVVPGGTRGKSLEAQEHLAEGRSRGGQTRKEQIGTEGYQEMGRKGGLSTVDKSGEERAAEEGISFDESKYKT 370
            + +QER++LD++AR+GETVVPGGT GKSLEA E+LAEGRSRGGQTR+EQ+G EGY EMGRKGGLST D+SG ERAA EGI  DESK+KT
Sbjct:    3 SGQQERSQLDRKAREGETVVPGGTGGKSLEAHENLAEGRSRGGQTRREQMGEEGYSEMGRKGGLSTNDESGGERAAREGIDIDESKFKT 91          
BLAST of CX053001 vs. ExPASy Swiss-Prot
Match: EM1_WHEAT (Em protein OS=Triticum aestivum GN=EM PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.388e-32
Identity = 66/89 (74.16%), Postives = 80/89 (89.89%), Query Frame = 2
Query:  104 ASEQERAELDQRARQGETVVPGGTRGKSLEAQEHLAEGRSRGGQTRKEQIGTEGYQEMGRKGGLSTVDKSGEERAAEEGISFDESKYKT 370
            + +QER++LD++AR+GETVVPGGT GKSLEAQE+LAEGRSRGGQTR+EQ+G EGY +MGRKGGLST D+SG +RAA EGI  DESK+KT
Sbjct:    3 SGQQERSQLDRKAREGETVVPGGTGGKSLEAQENLAEGRSRGGQTRREQMGEEGYSQMGRKGGLSTNDESGGDRAAREGIDIDESKFKT 91          
BLAST of CX053001 vs. ExPASy Swiss-Prot
Match: LE19A_HORVU (Late embryogenesis abundant protein B19.1A OS=Hordeum vulgare GN=B19.1A PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.812e-32
Identity = 66/89 (74.16%), Postives = 80/89 (89.89%), Query Frame = 2
Query:  104 ASEQERAELDQRARQGETVVPGGTRGKSLEAQEHLAEGRSRGGQTRKEQIGTEGYQEMGRKGGLSTVDKSGEERAAEEGISFDESKYKT 370
            + +QER++LD++AR+GETVVPGGT GKSLEAQ++LAEGRSRGGQTR+EQ+G EGY EMGRKGGLS+ D+SG ERAA EGI  DESK+KT
Sbjct:    3 SGQQERSQLDRKAREGETVVPGGTGGKSLEAQQNLAEGRSRGGQTRREQMGQEGYSEMGRKGGLSSNDESGGERAAREGIDIDESKFKT 91          
BLAST of CX053001 vs. ExPASy Swiss-Prot
Match: LE19B_HORVU (Late embryogenesis abundant protein B19.1B OS=Hordeum vulgare GN=B19.1B PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.367e-32
Identity = 66/89 (74.16%), Postives = 79/89 (88.76%), Query Frame = 2
Query:  104 ASEQERAELDQRARQGETVVPGGTRGKSLEAQEHLAEGRSRGGQTRKEQIGTEGYQEMGRKGGLSTVDKSGEERAAEEGISFDESKYKT 370
            + +QER++LD++AR+GETVVPGGT GKSLEA ++LAEGRSRGGQTR+EQ+G EGY EMGRKGGLST D+SG ERAA EGI  DESK+KT
Sbjct:    3 SGQQERSQLDRKAREGETVVPGGTGGKSLEAHDNLAEGRSRGGQTRREQMGEEGYSEMGRKGGLSTNDESGGERAAREGIDIDESKFKT 91          
BLAST of CX053001 vs. ExPASy Swiss-Prot
Match: EMB5_MAIZE (Late embryogenesis abundant protein EMB564 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.273e-32
Identity = 67/89 (75.28%), Postives = 79/89 (88.76%), Query Frame = 2
Query:  101 MASEQE-RAELDQRARQGETVVPGGTRGKSLEAQEHLAEGRSRGGQTRKEQIGTEGYQEMGRKGGLSTVDKSGEERAAEEGISFDESKY 364
            MAS QE R ELD++AR+GETVVPGGT GKS+EAQEHLAEGRSRGGQTR+EQ+G +GY EMG+KGGLST D+SG ERAA EG++ DESK+
Sbjct:    1 MASGQESRKELDRKAREGETVVPGGTGGKSVEAQEHLAEGRSRGGQTRREQLGQQGYSEMGKKGGLSTTDESGGERAAREGVTIDESKF 89          
BLAST of CX053001 vs. ExPASy Swiss-Prot
Match: LE19_GOSHI (Late embryogenesis abundant protein D-19 OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 6.887e-32
Identity = 64/89 (71.91%), Postives = 79/89 (88.76%), Query Frame = 2
Query:  104 ASEQERAELDQRARQGETVVPGGTRGKSLEAQEHLAEGRSRGGQTRKEQIGTEGYQEMGRKGGLSTVDKSGEERAAEEGISFDESKYKT 370
            A ++E+ ELD RA+QGETVVPGGTRGKSL+AQ +LAEGR +GG+TRK+Q+GTEGYQEMGRKGGLS  D SG ERAA+EG++ DESK++T
Sbjct:   12 APQEEKEELDARAKQGETVVPGGTRGKSLDAQINLAEGRHKGGETRKQQLGTEGYQEMGRKGGLSNSDMSGGERAADEGVTIDESKFRT 100          
The following BLAST results are available for this feature:
BLAST of CX053001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
EM6_ARATH2.529e-3475.56Em-like protein GEA6 OS=Arabidopsis thaliana GN=EM... [more]
EM4_WHEAT5.634e-3476.40Em protein H5 OS=Triticum aestivum GN=EMH5 PE=2 SV... [more]
EMB1_DAUCA7.358e-3477.78EMB-1 protein OS=Daucus carota GN=EMB-1 PE=2 SV=1[more]
EMP1_ORYSJ6.229e-3379.31Embryonic abundant protein 1 OS=Oryza sativa subsp... [more]
EM3_WHEAT1.063e-3275.28Em protein H2 OS=Triticum aestivum GN=EMH2 PE=2 SV... [more]
EM1_WHEAT1.388e-3274.16Em protein OS=Triticum aestivum GN=EM PE=2 SV=1[more]
LE19A_HORVU1.812e-3274.16Late embryogenesis abundant protein B19.1A OS=Hord... [more]
LE19B_HORVU2.367e-3274.16Late embryogenesis abundant protein B19.1B OS=Hord... [more]
EMB5_MAIZE5.273e-3275.28Late embryogenesis abundant protein EMB564 OS=Zea ... [more]
LE19_GOSHI6.887e-3271.91Late embryogenesis abundant protein D-19 OS=Gossyp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_49C10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-49C10-E20-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053001 ID=CX053001; Name=CX053001; organism=Citrus sinensis; type=EST; length=548bp
GTACCGCGGCCCCCCCTGAAATCGAATGAAATTTTCTTGAAACTTAGGGA
GGAGGAGGAGTAGTAGTAGTAGAGTCAACAAGAAAGAATCAAGGTAACCA
ATGGCCTCGGAACAGGAAAGAGCAGAACTTGACCAAAGGGCAAGGCAAGG
AGAAACTGTTGTCCCCGGCGGAACTCGTGGCAAGAGTCTTGAAGCCCAGG
AACACCTGGCCGAGGGGCGTAGCCGTGGAGGGCAGACTAGGAAGGAGCAG
ATAGGGACTGAAGGTTACCAAGAGATGGGACGCAAAGGAGGACTAAGCAC
CGTTGACAAGTCTGGAGAAGAGCGTGCAGCTGAAGAAGGGATCTCCTTTG
ACGAGTCGAAGTACAAAACTCGTAGGTCATCATAAGTTAGCATGTCCCGA
GTTCAATGATCTCGCTAGCTACCATGTTTTCTATTTCCTCTTCGTGGTTT
TTTTTTTTTTTTTTGGTGGGGTTTTTTTTTATGTACGTTGCATTTGAACG
TTTTATTAATGTAGTTGTTTTGACACTTTCTTAAAAAAAAAAAAAAAA
back to top