CX052926

Overview
NameCX052926
Unique NameCX052926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX052926 vs. ExPASy Swiss-Prot
Match: SCL9_ARATH (Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.378e-66
Identity = 115/165 (69.70%), Postives = 137/165 (83.03%), Query Frame = -2
Query:  198 KNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGWEALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKRATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWKP 692
            +NL DE++ V+S R+  LN I KINP +F+ GI NGAYNAPFFVTRFREALFHFS++FDMLETIVPRED ERM +E ++FG EALNV+ACEGWERVERPETYKQW VR +R+G VQ+P D  I+K +  +V + YHKDFVID+DNRWLLQGWKGR + ALS WKP
Sbjct:  550 ENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPSIMKTSLHKVHTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWKP 714          
BLAST of CX052926 vs. ExPASy Swiss-Prot
Match: SCL14_ARATH (Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 3.221e-55
Identity = 98/165 (59.39%), Postives = 130/165 (78.79%), Query Frame = -2
Query:  198 KNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGWEALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKRATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWKP 692
            +NLLDET+ V+S R+  L  IRKINP++FI  I +G YNAPFFVTRFREALFH+SA+FDM ++ + RED  R++ EK+ +G E +NVVACEG ERVERPETYKQWQ R +RAGF QLPL++++++    ++ +GY K+F +D++  WLLQGWKGRI+YA S W P
Sbjct:  602 RNLLDETVLVNSPRDAVLKLIRKINPNVFIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLAREDEMRLMYEKEFYGREIVNVVACEGTERVERPETYKQWQARLIRAGFRQLPLEKELMQNLKLKIENGYDKNFDVDQNGNWLLQGWKGRIVYASSLWVP 766          
BLAST of CX052926 vs. ExPASy Swiss-Prot
Match: SCL33_ARATH (Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.651e-54
Identity = 99/167 (59.28%), Postives = 129/167 (77.25%), Query Frame = -2
Query:  195 KNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGWEALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKRATDRVRSGYH-KDFVIDEDNRWLLQGWKGRIIYALSAWKPV 692
            +NLLDET+AV S R+  L  IRKI P +FI GI +G+YNAPFFVTRFRE LFH+S++FDM +T + RED  R++ EK+ +G E +NVVACEG ERVERPE+YKQWQ R +RAGF Q+PL++++V++    V SGY  K+F +D+D  WLLQGWKGRI+Y  S W P+
Sbjct:  528 RNLLDETVAVHSPRDTVLKLIRKIKPDVFIPGILSGSYNAPFFVTRFREVLFHYSSLFDMCDTNLTREDPMRVMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAMRAGFRQIPLEKELVQKLKLMVESGYKPKEFDVDQDCHWLLQGWKGRIVYGSSIWVPL 694          
BLAST of CX052926 vs. ExPASy Swiss-Prot
Match: SCL11_ARATH (Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.077e-50
Identity = 88/163 (53.99%), Postives = 120/163 (73.62%), Query Frame = -2
Query:  198 DETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPRED--RERMVIEKDIFGWEALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKRATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWKP 680
            DET+++DS R+  L   R INP +F+    NG YN+PFF+TRFREALFH+S++FDM +T +  ED  + R ++E+++   +A++V++CEG ER  RPETYKQW+VR LRAGF    + + I+K A + VR  YH+DFVID DN W+LQGWKGR+IYA S WKP
Sbjct:  437 DETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHYSSLFDMFDTTIHAEDEYKNRSLLERELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQIMKEAKEIVRKRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWKP 599          
BLAST of CX052926 vs. ExPASy Swiss-Prot
Match: SCL30_ARATH (Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.641e-49
Identity = 88/161 (54.66%), Postives = 117/161 (72.67%), Query Frame = -2
Query:  198 DETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGWEALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKRATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWKP 680
            DET++++S R+  L   R INP +F+    NG YN+PFF+TRFREALFH S++FDM ET +  +D  R ++E+++   +A++V+ACEG ER  RPETYKQWQVR LRAGF    L + IVK   + V+  YHKDFVID DN W+ QGWKGR++YA+S WKP
Sbjct:  420 DETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIRDAMSVIACEGSERFARPETYKQWQVRILRAGFRPAKLSKQIVKDGKEIVKERYHKDFVIDNDNHWMFQGWKGRVLYAVSCWKP 580          
BLAST of CX052926 vs. ExPASy Swiss-Prot
Match: SCL34_ARATH (Scarecrow-like protein 34 OS=Arabidopsis thaliana GN=SCL34 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.684e-49
Identity = 87/167 (52.10%), Postives = 129/167 (77.25%), Query Frame = -2
Query:  198 KNLLDETIAVDSS-RNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGWEALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKRATDRVRS-GYHKDFVIDEDNRWLLQGWKGRIIYALSAWKP 692
            KNL DET + ++  R+  L  IR +NP +FIH I NG++NAPFF++RF+EA++H+SA+FDM ++ +PR+++ER+  E++ +G EA+NV+ACE  +RVERPETY+QWQVR +RAGF Q  +  ++V+    +++   YHKDFV+DE+++WLLQGWKGR +YA S W P
Sbjct:  463 KNLQDETGSEENCPRDAVLKLIRNMNPDVFIHAIVNGSFNAPFFISRFKEAVYHYSALFDMFDSTLPRDNKERIRFEREFYGREAMNVIACEEADRVERPETYRQWQVRMVRAGFKQKTIKPELVELFRGKLKKWRYHKDFVVDENSKWLLQGWKGRTLYASSCWVP 629          
BLAST of CX052926 vs. ExPASy Swiss-Prot
Match: SCL31_ARATH (Scarecrow-like protein 31 OS=Arabidopsis thaliana GN=SCL31 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.893e-47
Identity = 83/156 (53.21%), Postives = 118/156 (75.64%), Query Frame = -2
Query:  198 DSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGWEALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKRATDRVRS-GYHKDFVIDEDNRWLLQGWKGRIIYALSAWKP 662
            D  R+ FL  IR +NP++F+    NG++NAPFF TRF+EALFH+SA+FD+    + +E+ ER+  E + +G E +NV+ACEG +RVERPETYKQWQVR +RAGF Q P++ ++V+   ++++  GYHKDFV+DED+ W LQGWKGRI+++ S W P
Sbjct:  506 DCPRDGFLKLIRDMNPNVFLSSTVNGSFNAPFFTTRFKEALFHYSALFDLFGATLSKENPERIHFEGEFYGREVMNVIACEGVDRVERPETYKQWQVRMIRAGFKQKPVEAELVQLFREKMKKWGYHKDFVLDEDSNWFLQGWKGRILFSSSCWVP 661          
BLAST of CX052926 vs. ExPASy Swiss-Prot
Match: SCL21_ARATH (Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.848e-19
Identity = 50/163 (30.67%), Postives = 89/163 (54.60%), Query Frame = -2
Query:  201 NLLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGWEALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKRATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWK 689
            +L DE++++++ R+  L  ++ ++P +          N   F+ RF E L +++AMF+ ++ ++PR  +ER+ IE+     + +N++ACEG ER+ER E   +W+ R   AGF   PL   I+      +   Y   + I+E +  L  GW  RI+ +  AWK
Sbjct:  252 HLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLS-SIISATIRALLRDYSNGYAIEERDGALYLGWMDRILVSSCAWK 413          
BLAST of CX052926 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 48/159 (30.19%), Postives = 89/159 (55.97%), Query Frame = -2
Query:  204 DETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGWEALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKRATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAW 680
            DE++ V++ R+  L  ++ ++P +          N   F+ RF E + ++SAMF+ ++  +PR+++ER+ +E+     + +N++ACEG +RVER E   +W+ R   AGF   PL    V     ++ + Y   + +DE +  +L GW+ R + + SAW
Sbjct:  413 DESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFGETMEYYSAMFESIDANLPRDNKERISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFRPYPLS-SYVNSVIRKLLACYSDKYTLDEKDGAMLLGWRSRKLISASAW 570          
BLAST of CX052926 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18
Identity = 47/160 (29.38%), Postives = 85/160 (53.12%), Query Frame = -2
Query:  201 DETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGWEALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKRATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWK 680
            DE++   + R+  L+ ++ +NP +      +   N   F  RF EA  ++SA+F+ L+  +PRE +ERM +E+     + +N+VACEG ER+ER E   +W+ R + AGF   P+   +     + ++  Y   + + E+   L   W+ + +   SAW+
Sbjct:  434 DESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYEYYSAVFESLDMTLPRESQERMNVERQCLARDIVNIVACEGEERIERYEAAGKWRARMMMAGFNPKPMSAKVTNNIQNLIKQQYCNKYKLKEEMGELHFCWEEKSLIVASAWR 593          
The following BLAST results are available for this feature:
BLAST of CX052926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SCL9_ARATH2.378e-6669.70Scarecrow-like protein 9 OS=Arabidopsis thaliana G... [more]
SCL14_ARATH3.221e-5559.39Scarecrow-like protein 14 OS=Arabidopsis thaliana ... [more]
SCL33_ARATH4.651e-5459.28Scarecrow-like protein 33 OS=Arabidopsis thaliana ... [more]
SCL11_ARATH9.077e-5053.99Scarecrow-like protein 11 OS=Arabidopsis thaliana ... [more]
SCL30_ARATH2.641e-4954.66Scarecrow-like protein 30 OS=Arabidopsis thaliana ... [more]
SCL34_ARATH7.684e-4952.10Scarecrow-like protein 34 OS=Arabidopsis thaliana ... [more]
SCL31_ARATH1.893e-4753.21Scarecrow-like protein 31 OS=Arabidopsis thaliana ... [more]
SCL21_ARATH2.848e-1930.67Scarecrow-like protein 21 OS=Arabidopsis thaliana ... [more]
CIGR1_ORYSJ1.082e-1830.19Chitin-inducible gibberellin-responsive protein 1 ... [more]
SCL1_ARATH1.846e-1829.38Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_48H03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-48H03-O5-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX052926 ID=CX052926; Name=CX052926; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTTTTTTTTTATATACCTGCCATGTTGGCAAACATGTCACTAG
CATTGCTTAACAGTAACAACATATAAACAGATCAAGGCTAATGAAAACCG
ATGAAAAGTCTTACATTTGCAATACTATATCCCCAAGAGCGATCTAAGGG
GTCAGGACAACAATCAGATTCTAACAAGCATGATTTTCAAGCTACACAGG
TTTCCAAGCTGAAAGAGCATAGATGATCCGTCCCTTCCATCCCTGCAGCA
GCCACCGGTTATCTTCATCAATAACAAAGTCCTTGTGGTAACCTGACCTC
ACTCGATCAGTTGCCCTCTTCACTATATCTCGGTCTAAAGGAAGCTGAAC
AAACCCAGCCCTGAGGTTACGGACCTGCCACTGCTTGTACGTCTCTGGCC
TCTCCACTCTTTCCCAGCCCTCACAAGCTACAACATTCAAGGCCTCCCAG
CCAAAGATGTCTTTCTCGATCACCATCCTCTCACGATCTTCACGAGGTAC
AATTGTTTCAAGCATATCAAACATTGCAGAGAAGTGAAACAGAGCCTCTC
GGAACCGGGTGACAAAGAAGGGTGCATTGTAGGCTCCATTCGTAATCCCG
TGAATAAACATATGAGGATTAATCTTCCTTATAAAATTGAGAAAAATATT
TCTTGAACTATCCACTGCAATAGTTTCATCAAGCAAGTTCTTGCCT
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