DN621636

Overview
NameDN621636
Unique NameDN621636
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6067 contig Csv1_Contig6067:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621636 vs. ExPASy Swiss-Prot
Match: AB20I_ARATH (ABC transporter I family member 20 OS=Arabidopsis thaliana GN=ABCI20 PE=2 SV=1)

HSP 1 Score: 389.037 bits (998), Expect = 1.294e-107
Identity = 192/239 (80.33%), Postives = 208/239 (87.03%), Query Frame = 3
Query:    6 MAVMENSKP---TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPRRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 713
            MAV E  K    TVEI+ L+FTYPGIDGHPPPGS PLI DF++TLN+ DRCLLVGSNGAGKTTILKI+GGKHMVEP MV+VLGRSAFHDT LTSSGDL YLGGEWRR+VAFAGFEVPIQMD+SAEKMIFGVAGIDP+RR ELIKVLDID+SWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEIT                KECEERGATIIYATHIFDGLE+WP+HIVYVA+GKLQLA+
Sbjct:    1 MAVTEEEKKRNSTVEISGLRFTYPGIDGHPPPGSKPLIEDFSITLNSSDRCLLVGSNGAGKTTILKILGGKHMVEPHMVRVLGRSAFHDTGLTSSGDLCYLGGEWRRDVAFAGFEVPIQMDISAEKMIFGVAGIDPQRRDELIKVLDIDISWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEDWPTHIVYVANGKLQLAL 239          
BLAST of DN621636 vs. ExPASy Swiss-Prot
Match: AB21I_ARATH (ABC transporter I family member 21 OS=Arabidopsis thaliana GN=ABCI21 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.498e-68
Identity = 132/226 (58.41%), Postives = 162/226 (71.68%), Query Frame = 3
Query:   36 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-MVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPRRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 710
            + ++ ++F+Y   D        P+  DF L L AG RCLLVG+NG+GKTT+LKI+ GKHMV  + +V+VL RSAFHDT L  SGDLSYLGG W +    AG ++P+Q D SAE MIFGV GIDP RR +LI +LDI+L WRMHKVSDGQRRRVQICMGLL PFKVLLLDE+T                +ECE+RGATI+YATHIFDGLE W SH+ Y+  G+L+L+
Sbjct:   13 IRVSGMQFSYDVQD--------PIFFDFNLDLPAGSRCLLVGANGSGKTTLLKILAGKHMVGGKNVVQVLDRSAFHDTELVCSGDLSYLGGSWSKTAGSAG-DIPLQGDFSAEHMIFGVEGIDPFRREKLIDLLDINLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEFFKEECEQRGATIVYATHIFDGLETWASHLAYINGGELKLS 229          
BLAST of DN621636 vs. ExPASy Swiss-Prot
Match: AB19I_ARATH (ABC transporter I family member 19 OS=Arabidopsis thaliana GN=ABCI19 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.495e-67
Identity = 130/223 (58.30%), Postives = 158/223 (70.85%), Query Frame = 3
Query:   36 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-MVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPRRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 701
            + ++ ++F Y   D        P+  DF L L AG RCLLVG+NG+GKTT+LKI+ GKHMV  + +V+VL RSAFHDT L  SGDLSYLGG W + V  AG EVP+Q D SAE MIFGV G DP RR +LI +LDI+L WRMHKVSDGQ+RRVQICMGLL PFKVLLLDE+T                +EC++RGATI+YATHIFDGLE W +H+ Y+  G+L
Sbjct:   14 IRVSGMQFAYEVED--------PIFFDFNLDLPAGSRCLLVGANGSGKTTLLKILAGKHMVGGKNVVQVLSRSAFHDTQLVCSGDLSYLGGSWSKTVGSAG-EVPLQGDFSAEHMIFGVEGTDPVRREKLIDLLDINLQWRMHKVSDGQKRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEFFKEECDQRGATIVYATHIFDGLETWATHLAYIQDGEL 227          
BLAST of DN621636 vs. ExPASy Swiss-Prot
Match: YE31_SCHPO (Uncharacterized ABC transporter ATP-binding protein C20G4.01 OS=Schizosaccharomyces pombe GN=SPAC20G4.01 PE=4 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 7.995e-41
Identity = 91/199 (45.73%), Postives = 121/199 (60.80%), Query Frame = 3
Query:  108 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGID-PRRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 701
            ++  TL L  G R LLVG+NGAGK+T+LK++ GK + +   + V G+  F +    SS    YLG EW            I  D+S  ++I  V G     RR  LI +LDIDL WRMH VSDG+RRRVQ+CMGLL+PF+VLLLDE+T                +E E R ATI+YATHIFDGL  WP+H+V+++ G++
Sbjct:   20 LDHVTLDLPKGSRTLLVGANGAGKSTLLKLLSGKSLAKAGHISVGGKDPFRE----SSSAFVYLGTEWVNNPV-------IHRDMSVARLIASVGGDKFAERRDFLISILDIDLRWRMHAVSDGERRRVQLCMGLLRPFEVLLLDEVTVDLDVLARADLLNFLQEETEVRNATIVYATHIFDGLAEWPTHLVHLSLGRI 207          
BLAST of DN621636 vs. ExPASy Swiss-Prot
Match: CAF16_YEAST (CCR4-associated factor 16 OS=Saccharomyces cerevisiae GN=CAF16 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.597e-33
Identity = 79/215 (36.74%), Postives = 116/215 (53.95%), Query Frame = 3
Query:   96 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD------------LSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPRRRAE-LIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 701
            S P + D  L +    R L+VG+NGAGK+T+LK++ GKH+     + V G   F   ++    D             +YLG EW            I  D+   +++  +     R R E L+++LDID+ WRMH++SDGQ+RRVQ+ MGLLKP++VLLLDE+T                 E E R  +++YATHIFDGL  WP+ + ++  GK+
Sbjct:   20 SDPSVVDINLQIPWNTRSLVVGANGAGKSTLLKLLSGKHLCLDGKILVNGLDPFSPLSMNQVDDDESVEDSTNYQTTTYLGTEWCHMSI-------INRDIGVLELLKSIGFDHFRERGERLVRILDIDVRWRMHRLSDGQKRRVQLAMGLLKPWRVLLLDEVTVDLDVIARARLLEFLKWETETRRCSVVYATHIFDGLAKWPNQVYHMKSGKI 227          
BLAST of DN621636 vs. ExPASy Swiss-Prot
Match: Y149_LACPL (Putative ABC transporter ATP-binding protein lp_0149 OS=Lactobacillus plantarum GN=lp_0149 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 59/230 (25.65%), Postives = 107/230 (46.52%), Query Frame = 3
Query:   21 NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPRRRAE-LIKVLDI--DLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 701
            + +P + I  L F      G+ P  + P+IND T+TL+ G+   LVG NG GK+T+  +I G  M +   ++  G S    +    +  + Y+  +  + ++       I  +V+A  ++ GVA  + +RR + ++KV  +     W +  +S GQ++RV I   L+    +L+LDE T                K  +E+  TI+  TH    +  +    + + HG +
Sbjct:  297 HDQPLLAIEHLTF------GYDP--AKPIINDITVTLHQGEMISLVGQNGTGKSTLSNLITGFLMPQSGKMRFNGHSLADQSVKERADQIGYILQDPNQMIS----TTMIFDEVAAGLVLRGVADDEVKRRVQAVLKVCGLYEFRHWPISALSFGQKKRVTIAAILVLEPAMLILDEPTAGQDLQHYTEMMTFLTKINQEQHMTIMLITHDMHLMLEYTDRTIVLGHGNI 514          
The following BLAST results are available for this feature:
BLAST of DN621636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AB20I_ARATH1.294e-10780.33ABC transporter I family member 20 OS=Arabidopsis ... [more]
AB21I_ARATH4.498e-6858.41ABC transporter I family member 21 OS=Arabidopsis ... [more]
AB19I_ARATH6.495e-6758.30ABC transporter I family member 19 OS=Arabidopsis ... [more]
YE31_SCHPO7.995e-4145.73Uncharacterized ABC transporter ATP-binding protei... [more]
CAF16_YEAST3.597e-3336.74CCR4-associated factor 16 OS=Saccharomyces cerevis... [more]
Y149_LACPL2.963e-1125.65Putative ABC transporter ATP-binding protein lp_01... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06P18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621636 ID=DN621636; Name=DN621636; organism=Citrus sinensis; type=EST; length=715bp
GAAAGATGGCCGTGATGGAGAATTCAAAACCAACGGTGGAGATCAACGCA
CTGAAGTTCACGTATCCGGGAATCGACGGCCATCCTCCGCCGGGGTCCAC
TCCATTAATCAACGATTTCACTCTCACTCTCAATGCTGGAGACCGGTGCC
TCCTCGTCGGATCCAACGGCGCTGGAAAAACAACGATATTAAAGATAATT
GGAGGGAAGCACATGGTAGAACCAGAAATGGTGAAAGTACTGGGAAGGTC
TGCTTTCCACGACACCGCTTTGACTTCGTCTGGTGATCTCTCCTATCTTG
GAGGAGAGTGGAGGCGAGAGGTTGCATTTGCTGGGTTTGAGGTTCCGATT
CAAATGGATGTGTCAGCAGAGAAAATGATTTTTGGAGTTGCAGGAATTGA
TCCACGGAGAAGAGCTGAACTGATCAAGGTGTTAGACATTGATCTATCAT
GGAGGATGCACAAGGTGTCTGATGGTCAGAGAAGACGTGTTCAAATTTGC
ATGGGCCTCCTCAAGCCATTCAAGGTTCTTCTTCTGGATGAGATAACTGT
TGATCTTGATGTGCTAGCAAGAGCTGACCTCCTTAGGTTTCTGAGAAAAG
AATGTGAAGAGCGCGGTGCCACAATTATCTACGCAACCCACATATTTGAT
GGTCTGGAGAACTGGCCATCACATATTGTGTATGTAGCTCATGGGAAGTT
GCAATTAGCAATGCC
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