CX052887

Overview
NameCX052887
Unique NameCX052887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX052887 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.585e-40
Identity = 79/134 (58.96%), Postives = 102/134 (76.12%), Query Frame = 3
Query:   90 MGGILSNIFGAGGFDGQDSPHSESATNVMSFHSSARWQLHFDSCKTSSQLMVIDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKHRA 491
            MGG LS +FG+G  D   +      + V+ F SSARWQLHF+  K S++L+V+DF+ASWCGPC+++EP +  MA  ++DV FVK+DVDEL DVA+EF V AMPTFVLVK GKE+ER+IGA+KDEL KK+ K RA
Sbjct:    1 MGGALSTVFGSGE-DATAAGTESEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSKLRA 133          
BLAST of CX052887 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.907e-28
Identity = 54/105 (51.43%), Postives = 78/105 (74.29%), Query Frame = 3
Query:  171 VMSFHSSARWQLHFDSCKTSSQLMVIDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKH 485
            V++ H+   W   F   K S +L+VIDF ASWCGPC+++ P + ++A  +  V F K+DVD+L DVA+E++V+AMP+FV++K G+EVER++GARKDELL KI  H
Sbjct:    7 VIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
BLAST of CX052887 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 6.051e-24
Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 3
Query:  162 ATNVMSFHSSARWQLHFDSCKTSSQLMVIDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKHRAQ 494
            A  V+S HS  +W +  +    + +L+VIDF ASWCGPC+IM P    +A  +    F+K+DVDEL  +A++F V+AMPTF+ +K G   +RV+GA K+EL  K+  H AQ
Sbjct:   17 AGEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHAAQ 127          
BLAST of CX052887 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.903e-24
Identity = 54/117 (46.15%), Postives = 74/117 (63.25%), Query Frame = 3
Query:  141 DSPHSESATNVMSFHSSARWQLHFDSCKTSSQLMVIDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKHRA 491
            D+  SE    V   H    W  +F     + +L+V+DF ASWCGPC+ + P L  +A     V F+K+DVDEL  V+ E+ V+AMPTFV +K GKEV+RV+GA+K+EL + I KH A
Sbjct:    5 DATSSEEG-QVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAA 120          
BLAST of CX052887 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.032e-23
Identity = 44/103 (42.72%), Postives = 74/103 (71.84%), Query Frame = 3
Query:  168 NVMSFHSSARWQLHFDSCKTSSQLMVIDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKI 476
            NV + HS+  W+        + +L+ +DF A+WCGPC+++ P   +++  + ++ F+K+DVDEL DVAQE+ V+AMPTF+ +K GK V++V+GA+KD+L +K+
Sbjct:    5 NVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKV 107          
BLAST of CX052887 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.299e-23
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  171 VMSFHSSARWQLHFDSCKTSSQLMVIDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKH 485
            V++ H+   W         S +L+VIDF ASWC PC+ + P   +MA  +++V F KIDVDEL  VAQEF+V+AMPTFV +K G  ++RV+GA KDE+ +K+ KH
Sbjct:    7 VIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of CX052887 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.922e-23
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 3
Query:  171 VMSFHSSARWQLHFDSCKTSSQLMVIDFAASWCGPCKIMEPELRKMASTY-SDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKH 485
            V+  H    W +  D+ K S++L+VIDF ASWC PC+++ P    +A  + S   F K+DVDEL +VAQEF V+AMPTFVL+K G  V++V+GARK++L   I KH
Sbjct:    8 VIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKH 113          
BLAST of CX052887 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.737e-23
Identity = 50/108 (46.30%), Postives = 74/108 (68.52%), Query Frame = 3
Query:  162 ATNVMSFHSSARWQLHFDSCKTSSQLMVIDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKH 485
            A  V++ H+   W     + K S++L+VIDF A WC PC+ + P   ++A  + DV F K+DVDEL+ VAQEF VQAMPTFV +KG +++++V+GA K+E+  K+ KH
Sbjct:   10 AGEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKH 117          
BLAST of CX052887 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.737e-23
Identity = 50/108 (46.30%), Postives = 74/108 (68.52%), Query Frame = 3
Query:  162 ATNVMSFHSSARWQLHFDSCKTSSQLMVIDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKH 485
            A  V++ H+   W     + K S++L+VIDF A WC PC+ + P   ++A  + DV F K+DVDEL+ VAQEF VQAMPTFV +KG +++++V+GA K+E+  K+ KH
Sbjct:   10 AGEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKH 117          
BLAST of CX052887 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.947e-22
Identity = 49/106 (46.23%), Postives = 72/106 (67.92%), Query Frame = 3
Query:  171 VMSFHSSARWQLHFDSCKTSSQLMVIDFAASWCGPCKIMEPELRKMASTY-SDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKH 485
            V+  H++  W +  D  K S++L+VIDF ASWC PC+++ P    +A  + S   F K+DVDEL  VA+EF V+AMPTFV +K G+ V++++GA K++L  KI KH
Sbjct:    8 VIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKH 113          
The following BLAST results are available for this feature:
BLAST of CX052887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
TRXH2_ARATH1.585e-4058.96Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_FAGES6.907e-2851.43Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH_WHEAT6.051e-2445.05Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH1_TOBAC7.903e-2446.15Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_PICMA1.032e-2342.72Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH5_ARATH2.299e-2348.57Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_BRANA3.922e-2349.06Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH_BRAOL8.737e-2346.30Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA8.737e-2346.30Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH4_ARATH1.947e-2246.23Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_48F05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-48F05-K9-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX052887 ID=CX052887; Name=CX052887; organism=Citrus sinensis; type=EST; length=670bp
CGTCTTCTTCTTATTATTCTTCTTCATAATCCCCCTTTTGTAAACGAATC
CAATACTATTGCGTCGTCTCGGCTTGTTCTTGTTTAAAGATGGGGGGTAT
TCTTTCAAACATTTTTGGGGCCGGAGGATTCGACGGCCAAGATTCACCCC
ACTCAGAATCTGCTACCAACGTTATGTCGTTTCACTCGTCCGCCAGATGG
CAGCTCCATTTCGATTCCTGCAAAACTTCTTCCCAATTGATGGTGATAGA
TTTTGCGGCGTCGTGGTGTGGGCCCTGCAAGATCATGGAACCGGAACTGC
GTAAGATGGCTTCGACCTACTCCGATGTCCAATTCGTCAAGATTGATGTT
GATGAGTTGTCTGATGTGGCGCAAGAGTTTCAGGTGCAGGCAATGCCTAC
GTTTGTGTTGGTGAAGGGAGGGAAGGAAGTTGAGAGGGTGATTGGTGCTC
GAAAGGATGAGCTTTTGAAGAAAATTGAGAAACACAGAGCTCAGCAGTGG
CAGACAGACCGGCTGCCATAAGCCCCGACTGATTGCTCGCTCATGTTCTC
TCTCTTATATATGTTTCGCTTTTTTGTATTTTCGATGCGCAATAGACTGA
TCTTCATCTTTATGTAATAATAAATTCTCTTTCAATGAATCTATCATATT
ATATAAAAAAAAAAAAAAAA
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