DN621625

Overview
NameDN621625
Unique NameDN621625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN621625 vs. ExPASy Swiss-Prot
Match: A4GAT_RAT (Lactosylceramide 4-alpha-galactosyltransferase OS=Rattus norvegicus GN=A4galt PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 42/135 (31.11%), Postives = 66/135 (48.89%), Query Frame = -1 
Query:  261 LNNAVLIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVVQR-------VQTRPGYNFTILPPTTFYPVNWNRIGGLFKVPQNQADSRWVNAKLLQLSREAYGVHLWNKQSNSIAIEEGS--VMGRMISQHC 638
            LN A L F+  H  L   I +F A ++G  WGH GP L++RV ++        ++R     T LPP  FYP+ W      F+    +        +L QL    Y VH+WNK+S    +E  S  ++ ++ +++C
Sbjct:  223 LNGAFLAFERKHEFLALCIRDFVAHYNGWIWGHQGPQLLTRVFKKWCSIHSLKESRACRGVTALPPEAFYPIPWQNWKKYFEDVSPE--------ELAQLLNATYAVHVWNKKSQGTHLEATSRALLAQLHARYC 349
[Close]
BLAST of DN621625 vs. ExPASy Swiss-Prot
Match: A4GAT_MOUSE (Lactosylceramide 4-alpha-galactosyltransferase OS=Mus musculus GN=A4galt PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 40/135 (29.63%), Postives = 65/135 (48.15%), Query Frame = -1 
Query:  261 LNNAVLIFDMNHPLLFKFIEEFAATFDGNKWGHNGPYLVSRVVQR-------VQTRPGYNFTILPPTTFYPVNWNRIGGLFKVPQNQADSRWVNAKLLQLSREAYGVHLWNKQSNSIAIEEGS--VMGRMISQHC 638
            LN A L F+  H  L   + +F A ++G  WGH GP L++RV ++        ++      T LPP  FYP+ W      F+    +        +L QL    Y VH+WNK+S    +E  S  ++ ++ +++C
Sbjct:  222 LNGAFLAFERKHEFLALCLHDFVANYNGWIWGHQGPQLLTRVFKKWCSIQSLEKSHACRGVTALPPEAFYPIPWQNWKKYFEDISPE--------ELTQLLNATYAVHVWNKKSQGTHLEATSKALLAQLHARYC 348
The following BLAST results are available for this feature:
BLAST of DN621625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
A4GAT_RAT5.459e-1231.11Lactosylceramide 4-alpha-galactosyltransferase OS=... [more]
A4GAT_MOUSE3.539e-1129.63Lactosylceramide 4-alpha-galactosyltransferase OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06P13_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621625 ID=DN621625; Name=DN621625; organism=Citrus sinensis; type=EST; length=677bp
ACAGACATTATTTTTTCTTTTCTTTTTGCTCTGTGTAAGATTTGCAAATA
ATAATACACATCTCATGTACATTGGGATCAGGAAACTAATTAAACAAAGG
AATAAGAATTAGCTAGCCCTAGCCCCACCCCTAGCAGGGCCTATCAAGGA
CAGAGTATATAATATGTACCCTATGTGTCTCTTAACTTCAAAGCAGAAGC
ATCACCTGTTTCAGCCTGAAAAATCTTCTTCTAAGAGCTGTAAATTTGAT
CACAAATGACACAATGCTGTGAGATCATTCTCCCCATTACACTGCCCTCT
TCGATGGCGATGCTGTTGCTTTGCTTGTTCCACAAGTGAACTCCATAAGC
CTCTCTGCTCAACTGCAGCAGCTTTGCATTTACCCATCTGGAATCAGCCT
GGTTTTGAGGCACCTTAAAAAGCCCTCCAATTCTGTTCCAGTTAACTGGA
TAAAAGGTGGTCGGTGGCAAGATTGTGAAATTATAACCAGGCCTAGTTTG
TACTCTCTGCACTACTCTGGAAACCAAATAAGGGCCGTTATGTCCCCATT
TGTTTCCATCAAAAGTGGCAGCAAATTCCTCAATGAATTTGAAAAGAAGT
GGGTGGTTCATGTCAAAAATGAGCACAGCATTATTCAGTCTAGTCCAATT
TCCTGACACCACATCAATGCTCTGTGC
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