DN621623

Overview
NameDN621623
Unique NameDN621623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6065 contig Csv1_Contig6065:1563..2253. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN621623 vs. ExPASy Swiss-Prot
Match: UBQL_DICDI (Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.017e-21
Identity = 61/150 (40.67%), Postives = 76/150 (50.67%), Query Frame = -2 
Query:  283 NPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSXXXXXXXXXXXXXPNMG------LEMLMNMFGGLGA--------GSLAVPNRSDVPPEQLYATQLSQLQEMGFFDTQENIRALIATAGNVHAAVERLL 690
            NPQLR M+DSN QLRE + NPEFL  +TNPE M  M+ LQQ + T                      MG           NMFGG+G          S   P  +  PPEQ +  QL QL+E+GF D   NI AL +T GN++ A++RLL
Sbjct:  373 NPQLRQMMDSNPQLREAMNNPEFLNMMTNPENMNAMMQLQQAMGTLRNNGVFPGGMGGMGGMGGMGGMGGMGGMDFSQFGNMFGGMGGMGGMGNNNSSTTRPPVNQEPPEQRFRLQLEQLEELGFVDRAANISALTSTNGNINLAIDRLL 522
The following BLAST results are available for this feature:
BLAST of DN621623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBQL_DICDI3.017e-2140.67Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06P12_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621623 ID=DN621623; Name=DN621623; organism=Citrus sinensis; type=EST; length=691bp
GTCATGCATTCCTTAAGATAATAAATTTTCCAAACAATTCATATGACAAA
TCTTAATACCGAGTATGTACAGTGACACTCAGGTCCGACAGAACTCTCTA
GAAAGAGAGCAAGTACACAGACAAGTTTTCAGCCCTTACTATGATATATA
ACTAAAATTATTCATACCCAAAATGGGCTTTGAATATGACTCCAGTTCAA
CCGATTGATCCCCACCAGTCCTTATCACGGCACTAACCAGGTGATATTAA
ACATTGATAGCAACCTACTGACCAGAATTCCCCAAGAGTCGCTCCACTGC
AGCATGGACATTTCCAGCAGTTGCAATTAAAGCCCGAATATTTTCTTGTG
TATCAAAGAAACCCATTTCTTGAAGTTGTGACAACTGGGTGGCATATAAT
TGCTCTGGAGGCACATCAGATCTGTTAGGAACAGCTAGGCTGCCCGCCCC
AAGTCCACCAAACATGTTCATTAACATCTCCAACCCCATGTTAGGAGTCC
CTGTGCCTCCACCAGTCTGGCCTGGTTGCTGCGTTGACTGTGCCCGACCA
AGTTGAGTCAAGAGAAATTGCTGCAAAGTCACCATTTGCTGCATCGTCTC
AGGATTAGTCAACTGACGAAGAAATTCAGGATTTTGTATCATTTCTCTCA
GTTGAGAATTGGAATCAACCATGCTGCGCAGCTGTGGATTA
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