CX052866

Overview
NameCX052866
Unique NameCX052866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX052866 vs. ExPASy Swiss-Prot
Match: NACA2_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.174e-39
Identity = 90/137 (65.69%), Postives = 99/137 (72.26%), Query Frame = -1
Query:  210 LKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 620
            LKLGMKPVTGVSRVTIKRTKN+LFFISKPDVFKSP+SETYVIFGEAKIED           QFRMP++G+   + +                      E RDIDLVMTQAGVSRSKAVKALK+H+GDIVSAIMELTT
Sbjct:   81 LKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQTQAAQQFRMPEIGATSQRAEASTATVEAQVEEDEEEIDETGVEARDIDLVMTQAGVSRSKAVKALKSHDGDIVSAIMELTT 217          
BLAST of CX052866 vs. ExPASy Swiss-Prot
Match: NACA4_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.587e-36
Identity = 85/137 (62.04%), Postives = 94/137 (68.61%), Query Frame = -1
Query:  210 LKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 620
            LKLGMKPVT VSRVTIKR+KN+LF ISKPDVFKSPNSETYVIFGEAKI+D           +F+MPD+ S++   D                      E +DIDLVMTQAGVSR KAVKALK  NGDIVSAIMELTT
Sbjct:   76 LKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSSQLQAQAAQRFKMPDVASMIPNTDGSEAATVAQEEEDDEDVDETGVEAKDIDLVMTQAGVSRPKAVKALKESNGDIVSAIMELTT 212          
BLAST of CX052866 vs. ExPASy Swiss-Prot
Match: NACA5_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.258e-33
Identity = 78/137 (56.93%), Postives = 93/137 (67.88%), Query Frame = -1
Query:  210 LKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 620
            LKLGMKPV+ VSRVTIKR KN+LF ISKPDV+KSPN+ETYVIFGEAK++D           +F+MPD+ S++                          E RDIDLVMTQAGVS++KAV ALK ++GDIVSAIMELTT
Sbjct:   73 LKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEAKVDDLSSQLQTQAAQRFKMPDVTSMLPNAGSEATMAPLAEEEDEDDVDDTGVEARDIDLVMTQAGVSKAKAVSALKANDGDIVSAIMELTT 209          
BLAST of CX052866 vs. ExPASy Swiss-Prot
Match: NACA1_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.258e-33
Identity = 81/137 (59.12%), Postives = 95/137 (69.34%), Query Frame = -1
Query:  210 LKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 620
            LKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVIFGEAKIED           QF+ PD+ +V++K +                      EP+DI+LVMTQAGVSR  AVKALK  +GDIVSAIMELTT
Sbjct:   71 LKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQIQSQAAEQFKAPDLSNVISKGE----SSSAAVVQDDEEVDEEGVEPKDIELVMTQAGVSRPNAVKALKAADGDIVSAIMELTT 203          
BLAST of CX052866 vs. ExPASy Swiss-Prot
Match: NACA3_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.151e-33
Identity = 79/138 (57.25%), Postives = 96/138 (69.57%), Query Frame = -1
Query:  210 LKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPD-XXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 620
            LKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVIFGEAKIED           QF+ P++ +V+++ +                       EP+DI+LVMTQAGVS+ +AVKALK  NGDIVSAIMELTT
Sbjct:   67 LKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQLQSQAAEQFKAPNLSNVISQGETSSAATAAAVQDDDDEEVDEEGVEPKDIELVMTQAGVSKPRAVKALKLANGDIVSAIMELTT 204          
BLAST of CX052866 vs. ExPASy Swiss-Prot
Match: NACA_PINTA (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.390e-32
Identity = 79/137 (57.66%), Postives = 93/137 (67.88%), Query Frame = -1
Query:  210 LKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 620
            LKLGMKPV+GVSRVTIK++KNILF IS PDVFKSP S+TY+ FGEAKIED           QF+ P++  V  KP+                      EP+DI+LVMTQAGVSR+KAVKALK  +GDIVSAIM+LTT
Sbjct:   74 LKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYIAFGEAKIEDLSSQLQTQAAEQFKAPNLSHVTMKPE-----SSTAAQEDEDEVDDTGVEPKDIELVMTQAGVSRTKAVKALKAADGDIVSAIMDLTT 205          
BLAST of CX052866 vs. ExPASy Swiss-Prot
Match: NACA_ORENI (Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.332e-26
Identity = 65/135 (48.15%), Postives = 88/135 (65.19%), Query Frame = -1
Query:  213 KLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 617
            KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED           +F++P  G  ++                         E +DI+LVM+QA VSR+KAV+ALK +N DIV+AIMELT
Sbjct:   82 KLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVP--GETVSNVQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214          
BLAST of CX052866 vs. ExPASy Swiss-Prot
Match: NACAD_MOUSE (NAC-alpha domain-containing protein 1 OS=Mus musculus GN=Nacad PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.390e-26
Identity = 65/138 (47.10%), Postives = 87/138 (63.04%), Query Frame = -1
Query:  213 KLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMA---KPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 617
            KLG++ + GV+R+TI+++KNILF I+KPDVFKSP S+TYV+FGEAKIED           +F++P   S +     P                       EPRDI+LVM QA V+R+KAV+ALK ++ DIV+AIMELT
Sbjct: 1366 KLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPSALVPELSPGPRVRPECEEQEEEDEEVEEAGLEPRDIELVMAQANVTRAKAVRALKDNHSDIVNAIMELT 1503          
BLAST of CX052866 vs. ExPASy Swiss-Prot
Match: NACA_XENTR (Nascent polypeptide-associated complex subunit alpha OS=Xenopus tropicalis GN=naca PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.394e-24
Identity = 63/135 (46.67%), Postives = 87/135 (64.44%), Query Frame = -1
Query:  213 KLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 617
            KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED           +F++   G  ++                         E +DI+LVM+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct:   81 KLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 213          
BLAST of CX052866 vs. ExPASy Swiss-Prot
Match: NACA_XENLA (Nascent polypeptide-associated complex subunit alpha OS=Xenopus laevis GN=naca PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.394e-24
Identity = 63/135 (46.67%), Postives = 87/135 (64.44%), Query Frame = -1
Query:  213 KLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 617
            KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED           +F++   G  ++                         E +DI+LVM+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct:   80 KLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGETVSNIQENTQTPTVQEESEEEEVDEAGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 212          
The following BLAST results are available for this feature:
BLAST of CX052866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
NACA2_ARATH1.174e-3965.69Nascent polypeptide-associated complex subunit alp... [more]
NACA4_ARATH1.587e-3662.04Nascent polypeptide-associated complex subunit alp... [more]
NACA5_ARATH1.258e-3356.93Nascent polypeptide-associated complex subunit alp... [more]
NACA1_ARATH1.258e-3359.12Nascent polypeptide-associated complex subunit alp... [more]
NACA3_ARATH8.151e-3357.25Nascent polypeptide-associated complex subunit alp... [more]
NACA_PINTA1.390e-3257.66Nascent polypeptide-associated complex subunit alp... [more]
NACA_ORENI4.332e-2648.15Nascent polypeptide-associated complex subunit alp... [more]
NACAD_MOUSE7.390e-2647.10NAC-alpha domain-containing protein 1 OS=Mus muscu... [more]
NACA_XENTR1.394e-2446.67Nascent polypeptide-associated complex subunit alp... [more]
NACA_XENLA1.394e-2446.67Nascent polypeptide-associated complex subunit alp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_48E05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-48E05-I9-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX052866 ID=CX052866; Name=CX052866; organism=Citrus sinensis; type=EST; length=623bp
TTTTTTTTTTTTTTTTTGGATGGAAAGATCAACTACTAACCATTAAAACA
ACTAGCGAGGAGGATTCTCATCCTCACTGCAAAAGAAATTGTATCTGCAA
CAGAAATTGTATTAAGTGCACAAAAATAGAGTAGTAATTCAGTCATCTCA
CCGACTACAATAACTAAATTCATCGACAGAAAAATACTGCATGGAAGCAA
ATCTACTCAAGTAGTAAGCTCCATGATAGCACTAACAATGTCTCCATTAT
GTGTCTTCAGAGCTTTGACAGCCTTGCTTCTTGAGACACCAGCCTGTGTC
ATGACCAAATCAATGTCCCGAGGCTCAACTCCCGTCTCATCAACTTCCTC
CTCTTCCTCATCTTGTTGTGCACCAGCAGCAGCAGAAGAGGCATCTGGTT
TCGCCATCACCGATCCCATGTCAGGCATCCTGAACTGCTGGGCAGCCTGT
GTCTGCAGCTGGGTGCTCAAATCCTCTATTTTGGCTTCCCCAAATATGAC
GTATGTTTCAGAATTTGGGCTCTTGAAAACATCAGGCTTTGAGATGAAAA
ATAGTATATTTTTGGTTCTCTTGATGGTTACCCTGCTAACTCCTGTTACA
GGTTTCATGCCCAACTTCAGCCT
back to top