DN621619

Overview
NameDN621619
Unique NameDN621619
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7035 contig Csv1_Contig7035:469..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN621619 vs. ExPASy Swiss-Prot
Match: ACT_COLSC (Actin OS=Coleochaete scutata PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.117e-56
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = -2 
Query:  354 IGMESDGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 680
            IGMES GIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEI+ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF
Sbjct:  269 IGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of DN621619 vs. ExPASy Swiss-Prot
Match: ACT7_ARATH (Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.385e-55
Identity = 105/109 (96.33%), Postives = 108/109 (99.08%), Query Frame = -2 
Query:  354 IGMESDGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 680
            IGME+ GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI+ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+KSEYDESGPSIVHRKCF
Sbjct:  269 IGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF 377
[Close]
BLAST of DN621619 vs. ExPASy Swiss-Prot
Match: ACT3_PEA (Actin-3 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.808e-55
Identity = 105/109 (96.33%), Postives = 108/109 (99.08%), Query Frame = -2 
Query:  354 IGMESDGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 680
            IGMES GIHETT+NSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI+ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAK+EYDESGPSIVHRKCF
Sbjct:  269 IGMESPGIHETTFNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DN621619 vs. ExPASy Swiss-Prot
Match: ACT_GOSHI (Actin OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.028e-55
Identity = 104/109 (95.41%), Postives = 108/109 (99.08%), Query Frame = -2 
Query:  354 IGMESDGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 680
            IGME+ GIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEI+ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAK+EYDESGPSIVHRKCF
Sbjct:  269 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DN621619 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSJ (Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.028e-55
Identity = 104/109 (95.41%), Postives = 108/109 (99.08%), Query Frame = -2 
Query:  354 IGMESDGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 680
            IGME+ GIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEI+ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAK+EYDESGPSIVHRKCF
Sbjct:  269 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DN621619 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSI (Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.028e-55
Identity = 104/109 (95.41%), Postives = 108/109 (99.08%), Query Frame = -2 
Query:  354 IGMESDGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 680
            IGME+ GIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEI+ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAK+EYDESGPSIVHRKCF
Sbjct:  269 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DN621619 vs. ExPASy Swiss-Prot
Match: ACT1_ARATH (Actin-1/3 OS=Arabidopsis thaliana GN=ACT1 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 4.028e-55
Identity = 104/109 (95.41%), Postives = 108/109 (99.08%), Query Frame = -2 
Query:  354 IGMESDGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 680
            IGME+ GIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEI+ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAK+EYDESGPSIVHRKCF
Sbjct:  269 IGMENAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DN621619 vs. ExPASy Swiss-Prot
Match: ACT11_SOLTU (Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.028e-55
Identity = 104/109 (95.41%), Postives = 108/109 (99.08%), Query Frame = -2 
Query:  354 IGMESDGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 680
            IGME+ GIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEI+ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAK+EYDESGPSIVHRKCF
Sbjct:  269 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DN621619 vs. ExPASy Swiss-Prot
Match: ACT_PINCO (Actin (Fragment) OS=Pinus contorta PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.261e-55
Identity = 104/109 (95.41%), Postives = 108/109 (99.08%), Query Frame = -2 
Query:  354 IGMESDGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 680
            IGME+ GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI+ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAK+EY+ESGPSIVHRKCF
Sbjct:   53 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKTEYEESGPSIVHRKCF 161
[Close]
BLAST of DN621619 vs. ExPASy Swiss-Prot
Match: ACT7_SOLTU (Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.261e-55
Identity = 104/109 (95.41%), Postives = 108/109 (99.08%), Query Frame = -2 
Query:  354 IGMESDGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 680
            IGME+ GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI+ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAK+E+DESGPSIVHRKCF
Sbjct:  269 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEFDESGPSIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of DN621619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 456
Match NameE-valueIdentityDescription
ACT_COLSC8.117e-5697.25Actin OS=Coleochaete scutata PE=2 SV=1[more]
ACT7_ARATH1.385e-5596.33Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1[more]
ACT3_PEA1.808e-5596.33Actin-3 OS=Pisum sativum PE=2 SV=1[more]
ACT_GOSHI4.028e-5595.41Actin OS=Gossypium hirsutum PE=3 SV=1[more]
ACT1_ORYSJ4.028e-5595.41Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE... [more]
ACT1_ORYSI4.028e-5595.41Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2... [more]
ACT1_ARATH4.028e-5595.41Actin-1/3 OS=Arabidopsis thaliana GN=ACT1 PE=1 SV=... [more]
ACT11_SOLTU4.028e-5595.41Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1[more]
ACT_PINCO5.261e-5595.41Actin (Fragment) OS=Pinus contorta PE=3 SV=1[more]
ACT7_SOLTU5.261e-5595.41Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06P10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621619 ID=DN621619; Name=DN621619; organism=Citrus sinensis; type=EST; length=681bp
CACAAATATTATTCATTTTAAAGAGAAACACTACTTATCCGTAAATAGAG
TAGAGCTTCAATAAAGTAAACAGTTTGAAAAAAAAAAAAGGAATAAAAAG
ACAGAATTAACATTTCCCACAATATTGGATGGGTAACAATTTATCACTAC
TGAGAAAAAGGGATAAAAATTTGGAAATAGTACAGCAACGATTATGTTCT
TTCCAGGTTGTTGTCCACACGTTGAAATGAAGAATGCCAAGGCAATAAAA
TGAATGAAAATGCAAGCAGCATTTTGGTTTTAAAATAGAAAATGCAAGCA
GCATTTTGGTTTTAAAATAGCACCATGCTCCAGTCCATATTTGCTCCTGA
TCAGAAGCATTTCCTGTGCACTATTGAAGGGCCAGACTCATCATACTCAG
ATTTGGCAATCCACATTTGCTGGAAAGTGCTGAGGGATGCCAAAATGGAT
CCTCCTATCCAGACACTATATTTCCTCTCGGGAGGAGCAACCACCTTAAT
CTTCATGCTGCTTGGTGCTAATGCACTGATTTCTTTGCTCATTCTATCAG
CAATACCAGGGAACATGGTGGAACCGCCACTAAGTACAATGTTCCCATAC
AGATCCTTCCTAATATCAACATCACATTTCATTATGGAGTTGTAAGTTGT
TTCATGAATACCATCAGACTCCATACCGATC
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