DN621617
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN621617 vs. ExPASy Swiss-Prot
Match: NOB1_PONAB (RNA-binding protein NOB1 OS=Pongo abelii GN=NOB1 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19 Identity = 60/160 (37.50%), Postives = 96/160 (60.00%), Query Frame = -3 Query: 181 MGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVAENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQLPQKYLYPKNKKKVNKEGDNFVTSDDIFKHH--TDKRAPLQPPIRKALAVFSGRRNPNDN 645 MGL +LA GM IR+ +IL+CH C+ T+++ R+FC CGN TL+KV+VTV+++G + SR P++ RG ++SLP P+GG+ AI +L + + PQ L K ++K N ++V F + + + A LQ +R + ++ +GRR N N Sbjct: 247 MGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGN-KTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHL-TEDQRFPQLRLSRKARQKTNVFAPDYVAGVSPFVENDISSRSATLQ--VRDS-SLGAGRRRLNPN 401
BLAST of DN621617 vs. ExPASy Swiss-Prot
Match: NOB1_HUMAN (RNA-binding protein NOB1 OS=Homo sapiens GN=NOB1 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.263e-19 Identity = 59/160 (36.88%), Postives = 95/160 (59.38%), Query Frame = -3 Query: 181 MGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVAENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQLPQKYLYPKNKKKVNKEGDNFVTSDDIFKHH--TDKRAPLQPPIRKALAVFSGRRNPNDN 645 MGL +LA GM IR+ +IL+CH C+ T+++ R+FC CGN TL+KV+VTV+++G + SR P++ RG ++SLP P+GG+ AI +L + + PQ L K ++K N +++ F + + + A LQ +R + + +GRR N N Sbjct: 248 MGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGN-KTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHL-TEDQRFPQLRLSQKARQKTNVFAPDYIAGVSPFVENDISSRSATLQ--VRDS-TLGAGRRRLNPN 402
BLAST of DN621617 vs. ExPASy Swiss-Prot
Match: NOB1_MACFA (RNA-binding protein NOB1 OS=Macaca fascicularis GN=NOB1 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.239e-18 Identity = 58/160 (36.25%), Postives = 95/160 (59.38%), Query Frame = -3 Query: 181 MGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVAENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQLPQKYLYPKNKKKVNKEGDNFVTSDDIFKHH--TDKRAPLQPPIRKALAVFSGRRNPNDN 645 MGL +LA GM IR+ +IL+CH C+ T+++ R+FC CGN TL+KV+VTV+++G + SR P++ RG ++SLP P+GG+ A+ +L + + PQ L K ++K N +++ F + + + A LQ +R + + +GRR N N Sbjct: 248 MGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCAHCGN-KTLKKVSVTVSDDGALHMHFSRNPKVLNPRGLRYSLPTPKGGKYAVNPHL-TEDQRFPQLRLSRKARQKTNVFAPDYIAGVSPFVENDVSSRSATLQ--VRDS-TLGAGRRRLNPN 402
BLAST of DN621617 vs. ExPASy Swiss-Prot
Match: NOB1_BOVIN (RNA-binding protein NOB1 OS=Bos taurus GN=NOB1 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.113e-18 Identity = 59/160 (36.88%), Postives = 95/160 (59.38%), Query Frame = -3 Query: 181 MGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVAENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQLPQKYLYPKNKKKVNKEGDNFVTSDDIFKHH--TDKRAPLQPPIRKALAVFSGRRNPNDN 645 MGL +LA GM IR+ +IL+CH C+ T+++ R+FC CGN TL+KV+VTV+++G + SR P++ RG ++SLP P+GG+ AI +L + + PQ L K ++K + ++V F + + + A LQ +R + + +GRR N N Sbjct: 249 MGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCAHCGN-KTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHL-TEDQRFPQLRLSRKARQKTDVFAPDYVAGVSPFAENDISSRSATLQ--VRDS-TLGAGRRRLNPN 403
BLAST of DN621617 vs. ExPASy Swiss-Prot
Match: NOB1_RAT (RNA-binding protein NOB1 OS=Rattus norvegicus GN=Nob1 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18 Identity = 56/160 (35.00%), Postives = 95/160 (59.38%), Query Frame = -3 Query: 181 MGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVAENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQLPQKYLYPKNKKKVNKEGDNFVTSDDIFKHH--TDKRAPLQPPIRKALAVFSGRRNPNDN 645 MGL +LA GM +R+ +IL+CH C+ T+++ R+FC CGN TL+KV+VT+ ++G + SR P++ RG ++SLP P+GG+ A+ +L + + PQ L K ++K N +++ F + + + A LQ +R ++ + +GRR N N Sbjct: 246 MGLHVLAVNGMLVREARSYILRCHGCFKTTSDMNRVFCGHCGN-KTLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAVNPHL-TEDQRFPQLRLSHKARQKTNVFAPDYIAGVSPFAENDISSRSAILQ--VRDSM-LGAGRRRLNPN 400
BLAST of DN621617 vs. ExPASy Swiss-Prot
Match: NOB1_MOUSE (RNA-binding protein NOB1 OS=Mus musculus GN=Nob1 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.370e-17 Identity = 56/160 (35.00%), Postives = 94/160 (58.75%), Query Frame = -3 Query: 181 MGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVAENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQLPQKYLYPKNKKKVNKEGDNFVTSDDIFKHH--TDKRAPLQPPIRKALAVFSGRRNPNDN 645 MGL +LA GM +R+ +IL+CH C+ T+++ R+FC CGN TL+KV+VT+ ++G + SR P++ RG ++SLP P+GG+ AI +L + + PQ L K ++K + +++ F + + + A LQ +R + + +GRR N N Sbjct: 239 MGLHVLAVNGMLVREARSYILRCHGCFKTTSDMNRVFCGHCGN-KTLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHL-TEDQRFPQLRLSQKARQKTDVFAPDYIAGVSPFAENDISSRSAILQ--VRDGM-LGAGRRRLNPN 393
BLAST of DN621617 vs. ExPASy Swiss-Prot
Match: NOB1_SCHPO (20S-pre-rRNA D-site endonuclease nob1 OS=Schizosaccharomyces pombe GN=nob1 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.016e-12 Identity = 50/160 (31.25%), Postives = 83/160 (51.88%), Query Frame = -3 Query: 184 MGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVAENG--IVLASRRPRITLRGTKFSLPMPQGG--RDAITKNLILREDQ--LPQKYLYPKNKKKVNKEGDNFVTSDDIFKHHTDKRAPLQPPIRKALAVFSGRRNPND 645 +GL L++ G +I+ + R++L+CH CYT+ ++ + FCP CG G TL K ++ G V + RGTK+SLP P G KN +LREDQ + + KK+++ ++++ S + T R +Q + +GR+NPN+ Sbjct: 234 IGLNLVSSDGFKIQNVKRFVLRCHGCYTVVKDMEKKFCPSCG-GNTLIKTTCSINSKGEFQVHLKKNFEWKTRGTKYSLPKPVHGTSNGKGKKNPVLREDQPEYQRAVRRMQRKKEIDLMDEDYLPS--LLTGVTKDRMYVQ--------IGAGRKNPNE 382 The following BLAST results are available for this feature:
BLAST of DN621617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DN621617 ID=DN621617; Name=DN621617; organism=Citrus sinensis; type=EST; length=647bpback to top |