DN621617

Overview
NameDN621617
Unique NameDN621617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621617 vs. ExPASy Swiss-Prot
Match: NOB1_PONAB (RNA-binding protein NOB1 OS=Pongo abelii GN=NOB1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 60/160 (37.50%), Postives = 96/160 (60.00%), Query Frame = -3
Query:  181 MGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVAENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQLPQKYLYPKNKKKVNKEGDNFVTSDDIFKHH--TDKRAPLQPPIRKALAVFSGRRNPNDN 645
            MGL +LA  GM IR+   +IL+CH C+  T+++ R+FC  CGN  TL+KV+VTV+++G +    SR P++   RG ++SLP P+GG+ AI  +L   + + PQ  L  K ++K N    ++V     F  +  + + A LQ  +R + ++ +GRR  N N
Sbjct:  247 MGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGN-KTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHL-TEDQRFPQLRLSRKARQKTNVFAPDYVAGVSPFVENDISSRSATLQ--VRDS-SLGAGRRRLNPN 401          
BLAST of DN621617 vs. ExPASy Swiss-Prot
Match: NOB1_HUMAN (RNA-binding protein NOB1 OS=Homo sapiens GN=NOB1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.263e-19
Identity = 59/160 (36.88%), Postives = 95/160 (59.38%), Query Frame = -3
Query:  181 MGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVAENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQLPQKYLYPKNKKKVNKEGDNFVTSDDIFKHH--TDKRAPLQPPIRKALAVFSGRRNPNDN 645
            MGL +LA  GM IR+   +IL+CH C+  T+++ R+FC  CGN  TL+KV+VTV+++G +    SR P++   RG ++SLP P+GG+ AI  +L   + + PQ  L  K ++K N    +++     F  +  + + A LQ  +R +  + +GRR  N N
Sbjct:  248 MGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGN-KTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHL-TEDQRFPQLRLSQKARQKTNVFAPDYIAGVSPFVENDISSRSATLQ--VRDS-TLGAGRRRLNPN 402          
BLAST of DN621617 vs. ExPASy Swiss-Prot
Match: NOB1_MACFA (RNA-binding protein NOB1 OS=Macaca fascicularis GN=NOB1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.239e-18
Identity = 58/160 (36.25%), Postives = 95/160 (59.38%), Query Frame = -3
Query:  181 MGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVAENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQLPQKYLYPKNKKKVNKEGDNFVTSDDIFKHH--TDKRAPLQPPIRKALAVFSGRRNPNDN 645
            MGL +LA  GM IR+   +IL+CH C+  T+++ R+FC  CGN  TL+KV+VTV+++G +    SR P++   RG ++SLP P+GG+ A+  +L   + + PQ  L  K ++K N    +++     F  +  + + A LQ  +R +  + +GRR  N N
Sbjct:  248 MGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCAHCGN-KTLKKVSVTVSDDGALHMHFSRNPKVLNPRGLRYSLPTPKGGKYAVNPHL-TEDQRFPQLRLSRKARQKTNVFAPDYIAGVSPFVENDVSSRSATLQ--VRDS-TLGAGRRRLNPN 402          
BLAST of DN621617 vs. ExPASy Swiss-Prot
Match: NOB1_BOVIN (RNA-binding protein NOB1 OS=Bos taurus GN=NOB1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.113e-18
Identity = 59/160 (36.88%), Postives = 95/160 (59.38%), Query Frame = -3
Query:  181 MGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVAENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQLPQKYLYPKNKKKVNKEGDNFVTSDDIFKHH--TDKRAPLQPPIRKALAVFSGRRNPNDN 645
            MGL +LA  GM IR+   +IL+CH C+  T+++ R+FC  CGN  TL+KV+VTV+++G +    SR P++   RG ++SLP P+GG+ AI  +L   + + PQ  L  K ++K +    ++V     F  +  + + A LQ  +R +  + +GRR  N N
Sbjct:  249 MGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCAHCGN-KTLKKVSVTVSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHL-TEDQRFPQLRLSRKARQKTDVFAPDYVAGVSPFAENDISSRSATLQ--VRDS-TLGAGRRRLNPN 403          
BLAST of DN621617 vs. ExPASy Swiss-Prot
Match: NOB1_RAT (RNA-binding protein NOB1 OS=Rattus norvegicus GN=Nob1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18
Identity = 56/160 (35.00%), Postives = 95/160 (59.38%), Query Frame = -3
Query:  181 MGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVAENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQLPQKYLYPKNKKKVNKEGDNFVTSDDIFKHH--TDKRAPLQPPIRKALAVFSGRRNPNDN 645
            MGL +LA  GM +R+   +IL+CH C+  T+++ R+FC  CGN  TL+KV+VT+ ++G +    SR P++   RG ++SLP P+GG+ A+  +L   + + PQ  L  K ++K N    +++     F  +  + + A LQ  +R ++ + +GRR  N N
Sbjct:  246 MGLHVLAVNGMLVREARSYILRCHGCFKTTSDMNRVFCGHCGN-KTLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAVNPHL-TEDQRFPQLRLSHKARQKTNVFAPDYIAGVSPFAENDISSRSAILQ--VRDSM-LGAGRRRLNPN 400          
BLAST of DN621617 vs. ExPASy Swiss-Prot
Match: NOB1_MOUSE (RNA-binding protein NOB1 OS=Mus musculus GN=Nob1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.370e-17
Identity = 56/160 (35.00%), Postives = 94/160 (58.75%), Query Frame = -3
Query:  181 MGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVAENGIVLA--SRRPRI-TLRGTKFSLPMPQGGRDAITKNLILREDQLPQKYLYPKNKKKVNKEGDNFVTSDDIFKHH--TDKRAPLQPPIRKALAVFSGRRNPNDN 645
            MGL +LA  GM +R+   +IL+CH C+  T+++ R+FC  CGN  TL+KV+VT+ ++G +    SR P++   RG ++SLP P+GG+ AI  +L   + + PQ  L  K ++K +    +++     F  +  + + A LQ  +R  + + +GRR  N N
Sbjct:  239 MGLHVLAVNGMLVREARSYILRCHGCFKTTSDMNRVFCGHCGN-KTLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHL-TEDQRFPQLRLSQKARQKTDVFAPDYIAGVSPFAENDISSRSAILQ--VRDGM-LGAGRRRLNPN 393          
BLAST of DN621617 vs. ExPASy Swiss-Prot
Match: NOB1_SCHPO (20S-pre-rRNA D-site endonuclease nob1 OS=Schizosaccharomyces pombe GN=nob1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.016e-12
Identity = 50/160 (31.25%), Postives = 83/160 (51.88%), Query Frame = -3
Query:  184 MGLRLLAPGGMQIRQLHRWILKCHACYTITAEIGRIFCPKCGNGGTLRKVAVTVAENG--IVLASRRPRITLRGTKFSLPMPQGG--RDAITKNLILREDQ--LPQKYLYPKNKKKVNKEGDNFVTSDDIFKHHTDKRAPLQPPIRKALAVFSGRRNPND 645
            +GL L++  G +I+ + R++L+CH CYT+  ++ + FCP CG G TL K   ++   G   V   +      RGTK+SLP P  G       KN +LREDQ    +     + KK+++   ++++ S  +    T  R  +Q        + +GR+NPN+
Sbjct:  234 IGLNLVSSDGFKIQNVKRFVLRCHGCYTVVKDMEKKFCPSCG-GNTLIKTTCSINSKGEFQVHLKKNFEWKTRGTKYSLPKPVHGTSNGKGKKNPVLREDQPEYQRAVRRMQRKKEIDLMDEDYLPS--LLTGVTKDRMYVQ--------IGAGRKNPNE 382          
The following BLAST results are available for this feature:
BLAST of DN621617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NOB1_PONAB5.561e-1937.50RNA-binding protein NOB1 OS=Pongo abelii GN=NOB1 P... [more]
NOB1_HUMAN7.263e-1936.88RNA-binding protein NOB1 OS=Homo sapiens GN=NOB1 P... [more]
NOB1_MACFA1.239e-1836.25RNA-binding protein NOB1 OS=Macaca fascicularis GN... [more]
NOB1_BOVIN2.113e-1836.88RNA-binding protein NOB1 OS=Bos taurus GN=NOB1 PE=... [more]
NOB1_RAT4.708e-1835.00RNA-binding protein NOB1 OS=Rattus norvegicus GN=N... [more]
NOB1_MOUSE1.370e-1735.00RNA-binding protein NOB1 OS=Mus musculus GN=Nob1 P... [more]
NOB1_SCHPO1.016e-1231.2520S-pre-rRNA D-site endonuclease nob1 OS=Schizosac... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06P09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621617 ID=DN621617; Name=DN621617; organism=Citrus sinensis; type=EST; length=647bp
TTTTTTGCTGGCAGAAAATTTATATATATGGGCTGACCTTTAGATCTCAG
TTCAACAACTCTTGATGAATCAAGAAGTGCTAAGTACTGAAAATGTAACT
ATTAGATAAACGCATTTTATCCCTGAAAATGAAAAACAAAACTGAAGTAG
AAGAAACTAATGTTTAGGATGGGAGTAATGATTGTCATTTGGATTCCTCC
TCCCGCTGAAAACTGCCAATGCCTTTCTTATGGGAGGCTGCAGAGGAGCT
CTTTTATCAGTATGATGTTTGAATATATCATCAGAAGTGACGAAGTTGTC
TCCCTCCTTATTTACTTTCTTCTTGTTTTTAGGATAAAGGTACTTTTGTG
GAAGTTGATCTTCACGTAAAATTAGATTCTTTGTAATGGCATCCCTTCCA
CCTTGGGGCATAGGTAGTGAAAATTTTGTTCCACGCAGCGTAATGCGAGG
CCGACGAGATGCTAATACAATTCCATTTTCAGCGACTGTAACAGCTACCT
TGCGTAAAGTGCCACCATTTCCACACTTTGGGCAGAAAATCCTCCCAATT
TCAGCAGTGATAGTGTAGCAGGCATGGCATTTCAGTATCCACCTATGTAG
CTGGCGGATCTGCATTCCTCCGGGTGCCAATAAGCGTAAACCCATCT
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